Published perturbation-response benchmark; transcribed, not reproduced.
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1 evaluation · 6 results. Different protocols are not a single leaderboard.
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perturbation-response-20261009-protocol-csendes2025-adamson-pex
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
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38 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Fine-tuned or trained per dataset with validation-set selection Context-only references | Benchmarking foundation cell models for post-perturbation RNA-seq prediction Supplementary Table 2 row 13 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: BMC Genomics 26:393, published 2025-04-23; PMC12016270 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.adaptation Fine-tuned or trained per dataset with validation-set selection Context-only references | Csendes et al. 2025, Supplementary Material 4 (Supplementary Tables 1-3) Supplementary Table 2 row 13 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 12864_2025_11600_MOESM4_ESM.xlsx from the Europe PMC supplementary bundle (hash is of the workbook; the bundle zip is rebuilt per request) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.aggregation Mean over test perturbations Context-only references | Benchmarking foundation cell models for post-perturbation RNA-seq prediction Supplementary Table 2 row 13 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: BMC Genomics 26:393, published 2025-04-23; PMC12016270 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.aggregation Mean over test perturbations Context-only references | Csendes et al. 2025, Supplementary Material 4 (Supplementary Tables 1-3) Supplementary Table 2 row 13 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 12864_2025_11600_MOESM4_ESM.xlsx from the Europe PMC supplementary bundle (hash is of the workbook; the bundle zip is rebuilt per request) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.budget Not reported Context-only references | Benchmarking foundation cell models for post-perturbation RNA-seq prediction Supplementary Table 2 row 13 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: BMC Genomics 26:393, published 2025-04-23; PMC12016270 full-text XML | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.budget Not reported Context-only references | Csendes et al. 2025, Supplementary Material 4 (Supplementary Tables 1-3) Supplementary Table 2 row 13 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 12864_2025_11600_MOESM4_ESM.xlsx from the Europe PMC supplementary bundle (hash is of the workbook; the bundle zip is rebuilt per request) | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.dataset_version cell-gears v0.0.1 Context-only references | Benchmarking foundation cell models for post-perturbation RNA-seq prediction Supplementary Table 2 row 13 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: BMC Genomics 26:393, published 2025-04-23; PMC12016270 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.dataset_version cell-gears v0.0.1 Context-only references | Csendes et al. 2025, Supplementary Material 4 (Supplementary Tables 1-3) Supplementary Table 2 row 13 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 12864_2025_11600_MOESM4_ESM.xlsx from the Europe PMC supplementary bundle (hash is of the workbook; the bundle zip is rebuilt per request) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.inputs Control cells plus perturbation identity (foundation models); perturbed-gene features (baselines) Context-only references | Benchmarking foundation cell models for post-perturbation RNA-seq prediction Supplementary Table 2 row 13 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: BMC Genomics 26:393, published 2025-04-23; PMC12016270 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.inputs Control cells plus perturbation identity (foundation models); perturbed-gene features (baselines) Context-only references | Csendes et al. 2025, Supplementary Material 4 (Supplementary Tables 1-3) Supplementary Table 2 row 13 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 12864_2025_11600_MOESM4_ESM.xlsx from the Europe PMC supplementary bundle (hash is of the workbook; the bundle zip is rebuilt per request) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-10-6e93f504adfc · Record review: source checked
Stable ID: perturbation-response-20261009-eval-csendes2025-adamson-knn-scgpt