Published DNA metagenomic classification comparison; transcribed, not reproduced.
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1 evaluation · 5 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: kraken Myco (Hall and Coin 2024) | Protocol: M. tuberculosis read classification, real Nanopore (Hall and Coin 2024 Table 6) Dataset: Artificial real Nanopore metagenome, non-human reads (Hall and Coin 2024) | 8.2 peak-memory gigabyte · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcekraken Myco on Artificial real Nanopore metagenome, non-human reads (Hall and Coin 2024) dna-pathogen-20261009-protocol-hall2024-mtb-reads-real-nanopore Aggregation: Not reported Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data · Table 6, row 'kraken Myco', column 'Memory (GB)†' |
| Configuration: kraken Myco (Hall and Coin 2024) | Protocol: M. tuberculosis read classification, real Nanopore (Hall and Coin 2024 Table 6) Dataset: Artificial real Nanopore metagenome, non-human reads (Hall and Coin 2024) | 6,755 inference-throughput sample-per-second · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcekraken Myco on Artificial real Nanopore metagenome, non-human reads (Hall and Coin 2024) dna-pathogen-20261009-protocol-hall2024-mtb-reads-real-nanopore Aggregation: Not reported Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data · Table 6, row 'kraken Myco', column 'Rate (reads/s)*' |
| Configuration: kraken Myco (Hall and Coin 2024) | Protocol: M. tuberculosis read classification, real Nanopore (Hall and Coin 2024 Table 6) Dataset: Artificial real Nanopore metagenome, non-human reads (Hall and Coin 2024) | 0.977 recall fraction · higher Uncertainty: 95% CI 0.9764 to 0.9782. Wilson score interval (table footnote) Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcekraken Myco on Artificial real Nanopore metagenome, non-human reads (Hall and Coin 2024) dna-pathogen-20261009-protocol-hall2024-mtb-reads-real-nanopore Aggregation: Not reported Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data · Table 6, row 'kraken Myco', column 'Sensitivity (95% CI)' |
| Configuration: kraken Myco (Hall and Coin 2024) | Protocol: M. tuberculosis read classification, real Nanopore (Hall and Coin 2024 Table 6) Dataset: Artificial real Nanopore metagenome, non-human reads (Hall and Coin 2024) | 1 specificity fraction · higher Uncertainty: 95% CI 1.0 to 1.0. Wilson score interval (table footnote) Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcekraken Myco on Artificial real Nanopore metagenome, non-human reads (Hall and Coin 2024) dna-pathogen-20261009-protocol-hall2024-mtb-reads-real-nanopore Aggregation: Not reported Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data · Table 6, row 'kraken Myco', column 'Specificity (95% CI)' |
| Configuration: kraken Myco (Hall and Coin 2024) | Protocol: M. tuberculosis read classification, real Nanopore (Hall and Coin 2024 Table 6) Dataset: Artificial real Nanopore metagenome, non-human reads (Hall and Coin 2024) | 0.977 youden-index fraction · higher Uncertainty: 95% CI 0.9764 to 0.9782. Wilson score interval (table footnote) Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcekraken Myco on Artificial real Nanopore metagenome, non-human reads (Hall and Coin 2024) dna-pathogen-20261009-protocol-hall2024-mtb-reads-real-nanopore Aggregation: Not reported Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data · Table 6, row 'kraken Myco', column 'Youden’s index (95% CI)' |
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dna-pathogen-20261009-protocol-hall2024-mtb-reads-real-nanopore
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
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19 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Database as stated per configuration Context-only references | Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data Table 6, row 'kraken Myco' Version: GigaScience 13:giae010, published online 2024-04-04; PMC10993716 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.aggregation All reads in the dataset Context-only references | Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data Table 6, row 'kraken Myco' Version: GigaScience 13:giae010, published online 2024-04-04; PMC10993716 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.budget 4 threads Context-only references | Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data Table 6, row 'kraken Myco' Version: GigaScience 13:giae010, published online 2024-04-04; PMC10993716 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.dataset_version Real reads combined: three 1000 Genomes individuals (R10.4), M. tuberculosis ERR8170871 (R10.3), ZymoBIOMICS D6322 ERR7287988 (R10.4); 915,209 non-human reads (3.47 Gbp) classified Context-only references | Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data Table 6, row 'kraken Myco' Version: GigaScience 13:giae010, published online 2024-04-04; PMC10993716 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.inputs Non-human reads after the human read removal step Context-only references | Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data Table 6, row 'kraken Myco' Version: GigaScience 13:giae010, published online 2024-04-04; PMC10993716 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.metric_implementation Per-read confusion counts against known read origin Context-only references | Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data Table 6, row 'kraken Myco' Version: GigaScience 13:giae010, published online 2024-04-04; PMC10993716 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.population Non-human reads of the dataset Context-only references | Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data Table 6, row 'kraken Myco' Version: GigaScience 13:giae010, published online 2024-04-04; PMC10993716 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.protocol_id dna-pathogen-20261009-protocol-hall2024-mtb-reads-real-nanopore Context-only references | Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data Table 6, row 'kraken Myco' Version: GigaScience 13:giae010, published online 2024-04-04; PMC10993716 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.split Single dataset Context-only references | Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data Table 6, row 'kraken Myco' Version: GigaScience 13:giae010, published online 2024-04-04; PMC10993716 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
attributes.limitations1 values
| Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data Table 6, row 'kraken Myco' Version: GigaScience 13:giae010, published online 2024-04-04; PMC10993716 full-text XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-09-8cc1db47c7f9 · Record review: source checked
Stable ID: dna-pathogen-20261009-eval-hall2024-real-nanopore-kraken2-myco