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1 evaluation · 1 result. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: MethAtlas (Sun et al. 2024 benchmark) | Protocol: Sun et al. 2024 liver cancer detection from deconvolved plasma WGBS (ROC-AUC) Dataset: Plasma cfDNA WGBS, 24 liver cancer patients and 32 healthy individuals (EGAD00001000856) | 0.91 auroc unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMethAtlas deconvolution, disease detection AUC (liver cancer WGBS) ctdnameth-20261009-protocol-sun2024-hcc-wgbs-detection-auc Aggregation: Not reported Systematic evaluation of methylation-based cell type deconvolution methods for plasma cell-free DNA; Sun et al. 2024, Additional file 1 (Tables S1-S8) · Sun Additional file 1, sheet 'Table S7 ', L4; row 'Liver cancer (WGBS)'; column 'MethAtlas' under 'AUC values' |
Source checking is not independent reproduction. Release 2026-10-09-8cc1db47c7f9.
ctdnameth-20261009-protocol-sun2024-hcc-wgbs-detection-auc
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38 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Not reported Context-only references | Systematic evaluation of methylation-based cell type deconvolution methods for plasma cell-free DNA Additional file 1 Table S7, cell L4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Genome Biology 25:318, published 2024-12-19; PMC11660681.1 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.adaptation Not reported Context-only references | Sun et al. 2024, Additional file 1 (Tables S1-S8) Additional file 1 Table S7, cell L4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2024_3456_MOESM1_ESM.xlsx) of Genome Biology 25:318 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.aggregation One AUC per cancer-type comparison Context-only references | Systematic evaluation of methylation-based cell type deconvolution methods for plasma cell-free DNA Additional file 1 Table S7, cell L4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Genome Biology 25:318, published 2024-12-19; PMC11660681.1 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.aggregation One AUC per cancer-type comparison Context-only references | Sun et al. 2024, Additional file 1 (Tables S1-S8) Additional file 1 Table S7, cell L4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2024_3456_MOESM1_ESM.xlsx) of Genome Biology 25:318 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.budget Not reported Context-only references | Systematic evaluation of methylation-based cell type deconvolution methods for plasma cell-free DNA Additional file 1 Table S7, cell L4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Genome Biology 25:318, published 2024-12-19; PMC11660681.1 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.budget Not reported Context-only references | Sun et al. 2024, Additional file 1 (Tables S1-S8) Additional file 1 Table S7, cell L4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2024_3456_MOESM1_ESM.xlsx) of Genome Biology 25:318 | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.dataset_version Reprocessed by Sun et al. 2024 (hg38, Bismark v0.24.2) Context-only references | Systematic evaluation of methylation-based cell type deconvolution methods for plasma cell-free DNA Additional file 1 Table S7, cell L4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Genome Biology 25:318, published 2024-12-19; PMC11660681.1 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.dataset_version Reprocessed by Sun et al. 2024 (hg38, Bismark v0.24.2) Context-only references | Sun et al. 2024, Additional file 1 (Tables S1-S8) Additional file 1 Table S7, cell L4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2024_3456_MOESM1_ESM.xlsx) of Genome Biology 25:318 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.inputs Estimated fractions of 35 reference cell types from each deconvolution method Context-only references | Systematic evaluation of methylation-based cell type deconvolution methods for plasma cell-free DNA Additional file 1 Table S7, cell L4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Genome Biology 25:318, published 2024-12-19; PMC11660681.1 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.inputs Estimated fractions of 35 reference cell types from each deconvolution method Context-only references | Sun et al. 2024, Additional file 1 (Tables S1-S8) Additional file 1 Table S7, cell L4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2024_3456_MOESM1_ESM.xlsx) of Genome Biology 25:318 | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-09-8cc1db47c7f9 · Record review: source checked
Stable ID: ctdnameth-20261009-eval-sun2024-methatlas-hcc-wgbs