Benchmark data in Lee 2026.
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Release 2026-10-10-6e93f504adfc · Evidence verified: Not verified
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147 evaluations · 294 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
Source checking is not independent reproduction. Release 2026-10-10-6e93f504adfc.
A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.population 20,815 unique protein-level entries (3,922 positive). Positives: cancerhotspots residues, CIViC oncogenic, or COSMIC recurrence of at least 10 samples; negatives: ClinVar benign or likely benign, or gnomAD allele frequency of at least 0.001. Gene role from CIViC variant mechanism where available, otherwise CGC gene role. tool_performance.tsv counts labelled variant rows per tool, which exceed the protein-level counts (for example 22,791 rows with 4,123 positives for AlphaMissense). Context-only references | An openly licensed benchmark and per-gene calibration map for missense pathogenicity predictors on activating cancer drivers Preprint Results first section and Methods 'Labels'; OncoCal data/README.md Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 2026.07.16.739080 v1, posted 2026-07-23; full-text HTML page | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the full-text HTML page, which is mutable (site chrome, metrics). The PDF request returned HTTP 429. |
| attributes.population 20,815 unique protein-level entries (3,922 positive). Positives: cancerhotspots residues, CIViC oncogenic, or COSMIC recurrence of at least 10 samples; negatives: ClinVar benign or likely benign, or gnomAD allele frequency of at least 0.001. Gene role from CIViC variant mechanism where available, otherwise CGC gene role. tool_performance.tsv counts labelled variant rows per tool, which exceed the protein-level counts (for example 22,791 rows with 4,123 positives for AlphaMissense). Context-only references | OncoCal repository, tables/tool_performance.tsv (per-tool AUROC and AUPRC by gene role) Preprint Results first section and Methods 'Labels'; OncoCal data/README.md Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: commit 40b7770f2a768ba800c4f4c6b48e2bfe967ed14a (2026-07-11) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator Preprint Results first section and Methods 'Labels'; OncoCal data/README.md Context-only references | An openly licensed benchmark and per-gene calibration map for missense pathogenicity predictors on activating cancer drivers Preprint Results first section and Methods 'Labels'; OncoCal data/README.md Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 2026.07.16.739080 v1, posted 2026-07-23; full-text HTML page | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the full-text HTML page, which is mutable (site chrome, metrics). The PDF request returned HTTP 429. |
| attributes.source_locator Preprint Results first section and Methods 'Labels'; OncoCal data/README.md Context-only references | OncoCal repository, tables/tool_performance.tsv (per-tool AUROC and AUPRC by gene role) Preprint Results first section and Methods 'Labels'; OncoCal data/README.md Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: commit 40b7770f2a768ba800c4f4c6b48e2bfe967ed14a (2026-07-11) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.split Whole labelled set per tool (tool-specific coverage; n and positives printed per row) Context-only references | An openly licensed benchmark and per-gene calibration map for missense pathogenicity predictors on activating cancer drivers Preprint Results first section and Methods 'Labels'; OncoCal data/README.md Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 2026.07.16.739080 v1, posted 2026-07-23; full-text HTML page | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the full-text HTML page, which is mutable (site chrome, metrics). The PDF request returned HTTP 429. |
| attributes.split Whole labelled set per tool (tool-specific coverage; n and positives printed per row) Context-only references | OncoCal repository, tables/tool_performance.tsv (per-tool AUROC and AUPRC by gene role) Preprint Results first section and Methods 'Labels'; OncoCal data/README.md Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: commit 40b7770f2a768ba800c4f4c6b48e2bfe967ed14a (2026-07-11) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description Benchmark data in Lee 2026. Context-only references | An openly licensed benchmark and per-gene calibration map for missense pathogenicity predictors on activating cancer drivers Preprint Results first section and Methods 'Labels'; OncoCal data/README.md Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 2026.07.16.739080 v1, posted 2026-07-23; full-text HTML page | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the full-text HTML page, which is mutable (site chrome, metrics). The PDF request returned HTTP 429. |
| description Benchmark data in Lee 2026. Context-only references | OncoCal repository, tables/tool_performance.tsv (per-tool AUROC and AUPRC by gene role) Preprint Results first section and Methods 'Labels'; OncoCal data/README.md Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: commit 40b7770f2a768ba800c4f4c6b48e2bfe967ed14a (2026-07-11) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| name Missense variants in 768 Cancer Gene Census genes with open oncogenicity labels Context-only references | An openly licensed benchmark and per-gene calibration map for missense pathogenicity predictors on activating cancer drivers Preprint Results first section and Methods 'Labels'; OncoCal data/README.md Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 2026.07.16.739080 v1, posted 2026-07-23; full-text HTML page | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the full-text HTML page, which is mutable (site chrome, metrics). The PDF request returned HTTP 429. |
| name Missense variants in 768 Cancer Gene Census genes with open oncogenicity labels Context-only references | OncoCal repository, tables/tool_performance.tsv (per-tool AUROC and AUPRC by gene role) Preprint Results first section and Methods 'Labels'; OncoCal data/README.md Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: commit 40b7770f2a768ba800c4f4c6b48e2bfe967ed14a (2026-07-11) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-10-6e93f504adfc · Record review: source checked
Stable ID: somatic-oncogenicity-20261009-data-lee2026-cgc-missense