rewirebio.iobenchmarks
Dataset

S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants

Benchmark set introduced in Pancotti et al. 2022.

Research readiness

These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.

Release 2026-10-10-7fcc3e48a123 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing
  • annotations: verification is missing
  • dependence: verification is missing

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • recipe pinned: verification is missing
  • resource estimate: verification is missing

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • independent validation: verification is missing
  • overlap checked: verification is missing

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Read reviewed discrepancy investigations

Evaluation results

21 evaluations · 231 results. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: ACDC-NN (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
–0.98 pearson-correlation
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN', column 'Antisimmetry r(d-r)'
Configuration: ACDC-NN (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
–0.02 antisymmetry-bias
kilocalorie-per-mole · unknown

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN', column 'Bias'
Configuration: ACDC-NN (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
1.05 mean-absolute-error
kilocalorie-per-mole · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN', column 'Direct MAE'
Configuration: ACDC-NN (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
0.46 pearson-correlation
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN', column 'Direct r'
Configuration: ACDC-NN (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
1.49 root-mean-squared-error
kilocalorie-per-mole · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN', column 'Direct RMSE'
Configuration: ACDC-NN (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
1.06 mean-absolute-error
kilocalorie-per-mole · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN', column 'Reverse MAE'
Configuration: ACDC-NN (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
0.45 pearson-correlation
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN', column 'Reverse r'
Configuration: ACDC-NN (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
1.5 root-mean-squared-error
kilocalorie-per-mole · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN', column 'Reverse RMSE'
Configuration: ACDC-NN (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
1.05 mean-absolute-error
kilocalorie-per-mole · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN', column 'Total MAE'
Configuration: ACDC-NN (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
0.61 pearson-correlation
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN', column 'Total r'
Configuration: ACDC-NN (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
1.5 root-mean-squared-error
kilocalorie-per-mole · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN', column 'Total RMSE'
Configuration: ACDC-NN-Seq (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
–1 pearson-correlation
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN-Seq on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN-Seq', column 'Antisimmetry r(d-r)'
Configuration: ACDC-NN-Seq (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
0 antisymmetry-bias
kilocalorie-per-mole · unknown

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN-Seq on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN-Seq', column 'Bias'
Configuration: ACDC-NN-Seq (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
1.08 mean-absolute-error
kilocalorie-per-mole · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN-Seq on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN-Seq', column 'Direct MAE'
Configuration: ACDC-NN-Seq (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
0.42 pearson-correlation
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN-Seq on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN-Seq', column 'Direct r'
Configuration: ACDC-NN-Seq (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
1.53 root-mean-squared-error
kilocalorie-per-mole · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN-Seq on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN-Seq', column 'Direct RMSE'
Configuration: ACDC-NN-Seq (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
1.08 mean-absolute-error
kilocalorie-per-mole · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN-Seq on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN-Seq', column 'Reverse MAE'
Configuration: ACDC-NN-Seq (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
0.42 pearson-correlation
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN-Seq on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN-Seq', column 'Reverse r'
Configuration: ACDC-NN-Seq (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
1.53 root-mean-squared-error
kilocalorie-per-mole · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN-Seq on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN-Seq', column 'Reverse RMSE'
Configuration: ACDC-NN-Seq (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
1.08 mean-absolute-error
kilocalorie-per-mole · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN-Seq on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN-Seq', column 'Total MAE'
Configuration: ACDC-NN-Seq (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
0.59 pearson-correlation
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN-Seq on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN-Seq', column 'Total r'
Configuration: ACDC-NN-Seq (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
1.53 root-mean-squared-error
kilocalorie-per-mole · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

ACDC-NN-Seq on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'ACDC-NN-Seq', column 'Total RMSE'
Configuration: DDGun (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
–0.96 pearson-correlation
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

DDGun on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'DDGun', column 'Antisimmetry r(d-r)'
Configuration: DDGun (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
–0.05 antisymmetry-bias
kilocalorie-per-mole · unknown

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

DDGun on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'DDGun', column 'Bias'
Configuration: DDGun (Pancotti et al. 2022)Protocol: S669 direct and reverse ddG prediction (Pancotti et al. 2022 Table 1)
Dataset: S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
1.25 mean-absolute-error
kilocalorie-per-mole · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

DDGun on S669 (Pancotti et al. 2022)

protein-stability-20261009-protocol-pancotti2022-s669

Aggregation: Not reported

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset · Table 1, row 'DDGun', column 'Direct MAE'

Source checking is not independent reproduction. Release 2026-10-10-7fcc3e48a123.

Dataset and evaluation context

A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

6 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-10-7fcc3e48a123
Property and statementOriginal source and locationReview and provenance
attributes.denominator
1338
Context-only references
Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset

Original source ↗

Section 2.1 'Datasets' paragraphs 1 and 3

Version: Briefings in Bioinformatics 23(2):bbab555, published 2022-01-11; PMC8921618 full-text XML
Retrieved: 2026-10-09T21:00:42Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.denominator

Source artifact SHA-256: 132038084a57c060add54f152f68a69ccaf198337f86a5ec03d39496945c0024

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.population
669 direct variants manually cleaned from ThermoMutDB (proteins under 25% sequence identity to S2648 and VariBench) plus 669 reverse variants with Robetta-modelled mutant structures; 1,338 in total
Context-only references
Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset

Original source ↗

Section 2.1 'Datasets' paragraphs 1 and 3

Version: Briefings in Bioinformatics 23(2):bbab555, published 2022-01-11; PMC8921618 full-text XML
Retrieved: 2026-10-09T21:00:42Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.population

Source artifact SHA-256: 132038084a57c060add54f152f68a69ccaf198337f86a5ec03d39496945c0024

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.source_locator
Section 2.1 'Datasets' paragraphs 1 and 3
Context-only references
Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset

Original source ↗

Section 2.1 'Datasets' paragraphs 1 and 3

Version: Briefings in Bioinformatics 23(2):bbab555, published 2022-01-11; PMC8921618 full-text XML
Retrieved: 2026-10-09T21:00:42Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 132038084a57c060add54f152f68a69ccaf198337f86a5ec03d39496945c0024

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.split
External test set; no training
Context-only references
Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset

Original source ↗

Section 2.1 'Datasets' paragraphs 1 and 3

Version: Briefings in Bioinformatics 23(2):bbab555, published 2022-01-11; PMC8921618 full-text XML
Retrieved: 2026-10-09T21:00:42Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.split

Source artifact SHA-256: 132038084a57c060add54f152f68a69ccaf198337f86a5ec03d39496945c0024

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

description
Benchmark set introduced in Pancotti et al. 2022.
Context-only references
Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset

Original source ↗

Section 2.1 'Datasets' paragraphs 1 and 3

Version: Briefings in Bioinformatics 23(2):bbab555, published 2022-01-11; PMC8921618 full-text XML
Retrieved: 2026-10-09T21:00:42Z

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: 132038084a57c060add54f152f68a69ccaf198337f86a5ec03d39496945c0024

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

name
S669: 669 single-point variants from ThermoMutDB in proteins under 25% identity to S2648 and VariBench, with reverse variants
Context-only references
Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset

Original source ↗

Section 2.1 'Datasets' paragraphs 1 and 3

Version: Briefings in Bioinformatics 23(2):bbab555, published 2022-01-11; PMC8921618 full-text XML
Retrieved: 2026-10-09T21:00:42Z

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: 132038084a57c060add54f152f68a69ccaf198337f86a5ec03d39496945c0024

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Sources and history

Release 2026-10-10-7fcc3e48a123 · Record review: source checked

1 source records and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: protein-stability-20261009-data-pancotti2022-s669

areas
proteins-complexes
contexts
research
population
669 direct variants manually cleaned from ThermoMutDB (proteins under 25% sequence identity to S2648 and VariBench) plus 669 reverse variants with Robetta-modelled mutant structures; 1,338 in total
split
External test set; no training
denominator
1338
source locator
Section 2.1 'Datasets' paragraphs 1 and 3
missing metadata
version: reason: unreported; note: ThermoMutDB release not stated
Related records

Suggest a correction