Dataset

Illumina ZymoBIOMICS D6300 standard (NovaSeq 6000), subsampled

Public mock community sequencing run as used in Portik et al. 2022.

Research readiness

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Release 2026-10-09-8cc1db47c7f9 · Evidence verified: Not verified

Evidence incomplete

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Verified: Not verified

Evidence incomplete

Investigate discrepancies

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artifact hashes: verification is missing
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score semantics: verification is missing
metric replay: verification is missing
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dependence: verification is missing

Verified: Not verified

Evidence incomplete

Run locally

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Missing or unresolved evidence

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artifact hashes: verification is missing
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Verified: Not verified

Evidence incomplete

Validate independently

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Missing or unresolved evidence

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artifact hashes: verification is missing
join integrity: verification is missing
score semantics: verification is missing
independent validation: verification is missing
overlap checked: verification is missing

Verified: Not verified

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Read reviewed discrepancy investigations

Evaluation results

7 evaluations · 56 results. Different protocols are not a single leaderboard.

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Source checking is not independent reproduction. Release 2026-10-09-8cc1db47c7f9.

Dataset and evaluation context

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Evidence

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Evidence table

Inspect claims, sources and review details

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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

8 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-09-8cc1db47c7f9
Property and statement	Original source and location	Review and provenance
attributes.accession NCBI SRX8824472 Context-only references	Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Original source ↗ Table 1 row 'Illumina Zymo D6300'; Methods 'Mock community datasets' paragraph 4 Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML Retrieved: 2026-10-09T19:45:04Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.accession` Source artifact SHA-256: `42cf6834ec87e149752176a65247f3aab9873f7b215037a195175a8a3113c1fe` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.population ZymoBIOMICS D6300: 10 species (8 bacteria at 12%, 2 yeasts at 2%). Subsampled to 20,000,000 of about 103 million 150 bp paired-end reads, 2.99 Gb. Context-only references	Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Original source ↗ Table 1 row 'Illumina Zymo D6300'; Methods 'Mock community datasets' paragraph 4 Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML Retrieved: 2026-10-09T19:45:04Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.population` Source artifact SHA-256: `42cf6834ec87e149752176a65247f3aab9873f7b215037a195175a8a3113c1fe` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.scope_note Species metrics are scored against 10 species. Context-only references	Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Original source ↗ Table 1 row 'Illumina Zymo D6300'; Methods 'Mock community datasets' paragraph 4 Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML Retrieved: 2026-10-09T19:45:04Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.scope_note` Source artifact SHA-256: `42cf6834ec87e149752176a65247f3aab9873f7b215037a195175a8a3113c1fe` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.source_locator Table 1 row 'Illumina Zymo D6300'; Methods 'Mock community datasets' paragraph 4 Context-only references	Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Original source ↗ Table 1 row 'Illumina Zymo D6300'; Methods 'Mock community datasets' paragraph 4 Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML Retrieved: 2026-10-09T19:45:04Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `42cf6834ec87e149752176a65247f3aab9873f7b215037a195175a8a3113c1fe` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.split Single sequencing run of one mock community; no split Context-only references	Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Original source ↗ Table 1 row 'Illumina Zymo D6300'; Methods 'Mock community datasets' paragraph 4 Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML Retrieved: 2026-10-09T19:45:04Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.split` Source artifact SHA-256: `42cf6834ec87e149752176a65247f3aab9873f7b215037a195175a8a3113c1fe` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.version As described in Portik et al. 2022 Table 1 (NCBI SRX8824472) Context-only references	Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Original source ↗ Table 1 row 'Illumina Zymo D6300'; Methods 'Mock community datasets' paragraph 4 Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML Retrieved: 2026-10-09T19:45:04Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.version` Source artifact SHA-256: `42cf6834ec87e149752176a65247f3aab9873f7b215037a195175a8a3113c1fe` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
description Public mock community sequencing run as used in Portik et al. 2022. Context-only references	Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Original source ↗ Table 1 row 'Illumina Zymo D6300'; Methods 'Mock community datasets' paragraph 4 Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML Retrieved: 2026-10-09T19:45:04Z	not individually reviewed No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `42cf6834ec87e149752176a65247f3aab9873f7b215037a195175a8a3113c1fe` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
name Illumina ZymoBIOMICS D6300 standard (NovaSeq 6000), subsampled Context-only references	Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Original source ↗ Table 1 row 'Illumina Zymo D6300'; Methods 'Mock community datasets' paragraph 4 Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML Retrieved: 2026-10-09T19:45:04Z	not individually reviewed No individual claim review recorded Audit details Field: `name` Source artifact SHA-256: `42cf6834ec87e149752176a65247f3aab9873f7b215037a195175a8a3113c1fe` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

Release 2026-10-09-8cc1db47c7f9 · Record review: source checked

1 source records and release history

Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Original source · BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML

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Technical metadata and extraction receipts

Stable ID: dna-pathogen-20261009-data-portik2022-illumina-zymo-d6300

areas: microbes-communities
contexts: clinical_research
version: As described in Portik et al. 2022 Table 1 (NCBI SRX8824472)
accession: NCBI SRX8824472
population: ZymoBIOMICS D6300: 10 species (8 bacteria at 12%, 2 yeasts at 2%). Subsampled to 20,000,000 of about 103 million 150 bp paired-end reads, 2.99 Gb.
split: Single sequencing run of one mock community; no split
source locator: Table 1 row 'Illumina Zymo D6300'; Methods 'Mock community datasets' paragraph 4
scope note: Species metrics are scored against 10 species.

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