rewirebio.iobenchmarks
Dataset

SEQC2 HCC1395 high-confidence somatic CNV call set

Consensus somatic CNV set for the HCC1395/HCC1395BL pair.

Research readiness

These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.

Release 2026-10-09-8eac2440869c · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • metric replay: verification is missing
  • annotations: verification is missing
  • dependence: verification is missing

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • recipe pinned: verification is missing
  • resource estimate: verification is missing

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • artifact hashes: verification is missing
  • join integrity: verification is missing
  • score semantics: verification is missing
  • independent validation: verification is missing
  • overlap checked: verification is missing

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Read reviewed discrepancy investigations

Evaluation results

0 evaluations · 0 results. Different protocols are not a single leaderboard.

Applied filters: All linked evaluations

No evaluations linked in this release.

Source checking is not independent reproduction. Release 2026-10-09-8eac2440869c.

Dataset and evaluation context

A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

6 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-09-8eac2440869c
Property and statementOriginal source and locationReview and provenance
attributes.scope_note
Per-caller precision and recall are shown only in figures.
Context-only references
Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome

Original source ↗

Results; Table 1; Additional file 5

Version: Genome Biology 25:163, published 2024-06-20; PMC11188507 full-text XML
Retrieved: 2026-10-09T15:25:50Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.scope_note

Source artifact SHA-256: 944529ff7c2859bf04e5a95bd139eb2faffe444dc754d0f0736b648b706c8f6b

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.source_locator
Results; Table 1; Additional file 5
Context-only references
Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome

Original source ↗

Results; Table 1; Additional file 5

Version: Genome Biology 25:163, published 2024-06-20; PMC11188507 full-text XML
Retrieved: 2026-10-09T15:25:50Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 944529ff7c2859bf04e5a95bd139eb2faffe444dc754d0f0736b648b706c8f6b

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.split
21 WGS and 12 WES replicates across six centres
Context-only references
Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome

Original source ↗

Results; Table 1; Additional file 5

Version: Genome Biology 25:163, published 2024-06-20; PMC11188507 full-text XML
Retrieved: 2026-10-09T15:25:50Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.split

Source artifact SHA-256: 944529ff7c2859bf04e5a95bd139eb2faffe444dc754d0f0736b648b706c8f6b

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.version
Genome Biology 2024 Additional file 5 (VCF)
Context-only references
Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome

Original source ↗

Results; Table 1; Additional file 5

Version: Genome Biology 25:163, published 2024-06-20; PMC11188507 full-text XML
Retrieved: 2026-10-09T15:25:50Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.version

Source artifact SHA-256: 944529ff7c2859bf04e5a95bd139eb2faffe444dc754d0f0736b648b706c8f6b

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

description
Consensus somatic CNV set for the HCC1395/HCC1395BL pair.
Context-only references
Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome

Original source ↗

Results; Table 1; Additional file 5

Version: Genome Biology 25:163, published 2024-06-20; PMC11188507 full-text XML
Retrieved: 2026-10-09T15:25:50Z

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: 944529ff7c2859bf04e5a95bd139eb2faffe444dc754d0f0736b648b706c8f6b

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

name
SEQC2 HCC1395 high-confidence somatic CNV call set
Context-only references
Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome

Original source ↗

Results; Table 1; Additional file 5

Version: Genome Biology 25:163, published 2024-06-20; PMC11188507 full-text XML
Retrieved: 2026-10-09T15:25:50Z

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: 944529ff7c2859bf04e5a95bd139eb2faffe444dc754d0f0736b648b706c8f6b

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Sources and history

Release 2026-10-09-8eac2440869c · Record review: discovered

1 source records and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: cnv-20261009-data-seqc2-hcc1395-cnv-benchmark

areas
dna-genomes
contexts
clinical_research
version
Genome Biology 2024 Additional file 5 (VCF)
split
21 WGS and 12 WES replicates across six centres
source locator
Results; Table 1; Additional file 5
scope note
Per-caller precision and recall are shown only in figures.
Related records

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