SEQC2 HCC1395 somatic CNV benchmark
Benchmark of six somatic CNV callers on a hyper-diploid cancer cell line.
No reviewed evaluations are linked here in this release. See the sources and separately identified configurations below.
Overview
Benchmark of six somatic CNV callers on a hyper-diploid cancer cell line.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Published results still to collect
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Results
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Source checking is not independent reproduction. Release 2026-10-09-8eac2440869c.
Methods and evaluation design
Procedure, tasks and evaluated configurations
Baseline coverage
Reference methods help show what a model adds beyond simple controls. We track a null control and a conventional method for each protocol.
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Protocol coverage CSV (gzip) · Model evaluation matrix (gzip) · Source table (gzip) · Release and checksums (gzip)
Coverage is derived from release 2026-10-09-8eac2440869c. Source citations describe the original records; they do not validate an unreviewed baseline proposal. No results have been generated by this audit.
Run instructions
No runnable recipe has been reviewed for this benchmark. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
Strengths, limitations and unresolved questions
Evidence
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Evidence table
Inspect claims, sources and review details
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Sources and history
Release 2026-10-09-8eac2440869c · Record review: discovered
1 source records and release history
- Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome · Original source · Genome Biology 25:163, published 2024-06-20; PMC11188507 full-text XML
Technical metadata and extraction receipts
Stable ID: cnv-20261009-benchmark-seqc2-hcc1395-somatic-cnv
- areas
- dna-genomes
- contexts
- clinical_research
- entity level
- suite
- version
- 2024
- task
- Somatic copy-number gain, loss and LOH detection in tumour/normal WGS and WES
- scope note
- Callers ascatNgs 4.2.1, CNVkit 0.9.1, Control-FREEC 11.6, DRAGEN 4.0.x, FACETS 0.6.0, HATCHet 1.0.4. Accuracy is reported in figures only; no results extracted.
- limitations
- No per-caller accuracy table in the article or Additional file 1