tables_not_extracted: vep-lit-20261014-source-livesey2025-supplementary-2
Tables not extracted of Livesey and Marsh 2025, Supplementary Material 2 (Tables S1-S8)
Not extracted as results: the pairwise win-rate matrix bodies of Tables S3 (97 x 97) and S8 (85 x 85), kept only through each VEP's rank_score, proteins and top_5_winrate columns; Table S4 (bootstrap counts behind the Figure 2 error bars); the absolute_difference column of Table S5 (a difference of two extracted values); Tables S1 and S2, used for dataset and configuration descriptions; Figures 1-4 and Supplementary Figs. S1-S6 (no printed values; the AUPRC ranking of Fig. S5 is figure-only); the figshare deposits of per-variant predictions and scripts.
Descriptive fact transcribed from the pinned source.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
12 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Claimed field tables_not_extracted Context-only references | Livesey and Marsh 2025, Genome Biology 26:104 (Europe PMC full text XML) Supplementary Material 2 Legends and Tables S1-S8; Figures 1-4; Data availability Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC12016141 (published 2025-04-22; Genome Biol 26:104) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed field tables_not_extracted Context-only references | Livesey and Marsh 2025, Supplementary Material 2 (Tables S1-S8) Supplementary Material 2 Legends and Tables S1-S8; Figures 1-4; Data availability Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 13059_2025_3575_MOESM2_ESM.xlsx as published with PMC12016141 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Supplementary Material 2 Legends and Tables S1-S8; Figures 1-4; Data availability Context-only references | Livesey and Marsh 2025, Genome Biology 26:104 (Europe PMC full text XML) Supplementary Material 2 Legends and Tables S1-S8; Figures 1-4; Data availability Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC12016141 (published 2025-04-22; Genome Biol 26:104) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Supplementary Material 2 Legends and Tables S1-S8; Figures 1-4; Data availability Context-only references | Livesey and Marsh 2025, Supplementary Material 2 (Tables S1-S8) Supplementary Material 2 Legends and Tables S1-S8; Figures 1-4; Data availability Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 13059_2025_3575_MOESM2_ESM.xlsx as published with PMC12016141 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed value Not extracted as results: the pairwise win-rate matrix bodies of Tables S3 (97 x 97) and S8 (85 x 85), kept only through each VEP's rank_score, proteins and top_5_winrate columns; Table S4 (bootstrap counts behind the Figure 2 error bars); the absolute_difference column of Table S5 (a difference of two extracted values); Tables S1 and S2, used for dataset and configuration descriptions; Figures 1-4 and Supplementary Figs. S1-S6 (no printed values; the AUPRC ranking of Fig. S5 is figure-only); the figshare deposits of per-variant predictions and scripts. Context-only references | Livesey and Marsh 2025, Genome Biology 26:104 (Europe PMC full text XML) Supplementary Material 2 Legends and Tables S1-S8; Figures 1-4; Data availability Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC12016141 (published 2025-04-22; Genome Biol 26:104) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed value Not extracted as results: the pairwise win-rate matrix bodies of Tables S3 (97 x 97) and S8 (85 x 85), kept only through each VEP's rank_score, proteins and top_5_winrate columns; Table S4 (bootstrap counts behind the Figure 2 error bars); the absolute_difference column of Table S5 (a difference of two extracted values); Tables S1 and S2, used for dataset and configuration descriptions; Figures 1-4 and Supplementary Figs. S1-S6 (no printed values; the AUPRC ranking of Fig. S5 is figure-only); the figshare deposits of per-variant predictions and scripts. Context-only references | Livesey and Marsh 2025, Supplementary Material 2 (Tables S1-S8) Supplementary Material 2 Legends and Tables S1-S8; Figures 1-4; Data availability Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 13059_2025_3575_MOESM2_ESM.xlsx as published with PMC12016141 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Descriptive fact transcribed from the pinned source. Context-only references | Livesey and Marsh 2025, Genome Biology 26:104 (Europe PMC full text XML) Supplementary Material 2 Legends and Tables S1-S8; Figures 1-4; Data availability Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC12016141 (published 2025-04-22; Genome Biol 26:104) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Descriptive fact transcribed from the pinned source. Context-only references | Livesey and Marsh 2025, Supplementary Material 2 (Tables S1-S8) Supplementary Material 2 Legends and Tables S1-S8; Figures 1-4; Data availability Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 13059_2025_3575_MOESM2_ESM.xlsx as published with PMC12016141 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: subject vep-lit-20261014-source-livesey2025-supplementary-2 Context-only references | Livesey and Marsh 2025, Genome Biology 26:104 (Europe PMC full text XML) Supplementary Material 2 Legends and Tables S1-S8; Figures 1-4; Data availability Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC12016141 (published 2025-04-22; Genome Biol 26:104) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: subject vep-lit-20261014-source-livesey2025-supplementary-2 Context-only references | Livesey and Marsh 2025, Supplementary Material 2 (Tables S1-S8) Supplementary Material 2 Legends and Tables S1-S8; Figures 1-4; Data availability Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 13059_2025_3575_MOESM2_ESM.xlsx as published with PMC12016141 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
2 source records and release history
- Livesey and Marsh 2025, Supplementary Material 2 (Tables S1-S8) · Original source · 13059_2025_3575_MOESM2_ESM.xlsx as published with PMC12016141
- Livesey and Marsh 2025, Genome Biology 26:104 (Europe PMC full text XML) · Original source · PMC12016141 (published 2025-04-22; Genome Biol 26:104)
Technical metadata and extraction receipts
Stable ID: vep-lit-20261014-claim-livesey2025-not-extracted
- field
- tables_not_extracted
- value
- Not extracted as results: the pairwise win-rate matrix bodies of Tables S3 (97 x 97) and S8 (85 x 85), kept only through each VEP's rank_score, proteins and top_5_winrate columns; Table S4 (bootstrap counts behind the Figure 2 error bars); the absolute_difference column of Table S5 (a difference of two extracted values); Tables S1 and S2, used for dataset and configuration descriptions; Figures 1-4 and Supplementary Figs. S1-S6 (no printed values; the AUPRC ranking of Fig. S5 is figure-only); the figshare deposits of per-variant predictions and scripts.
- source locator
- Supplementary Material 2 Legends and Tables S1-S8; Figures 1-4; Data availability
- review
- reviewer: claude; reviewer note: Claude review agent; no human review claimed. Independent Claude (Opus 5.5) review agent, separate from the extraction agent that built this batch. Automated review only. Transcription, not reproduction.; reviewed at: 2026-10-14T15:30:00Z; artifact sha256: 1b0d792d1a5d3daa95545a7973cabb131c45e42c952e7e5a447a72deef1d1e70; retrieval url: https://static-content.springer.com/esm/art%3A10.1186%2Fs13059-025-03575-w/MediaObjects/13059_2025_3575_MOESM2_ESM.xlsx; method: ai-assisted-source-review; scope-review; method note: Checked against the workbook legends and sheet list, Figures 1-4 and Data availability in the article XML.; note: Correct; the AUPRC ranking is Fig. S5 in Results (Methods says Fig. S4), and both are figure-only.