Evidence claim

Relevance of Norman19 dual perturbations (K562 CRISPRa) to "Assess models for genetic perturbation experiments"

Use case: Assess models for genetic perturbation experiments
Assessed by: PerturBench v4 combination prediction of held-out dual perturbations on Norman19
Relevance: Proxy evidence
Endpoint: Cosine similarity and rank of predicted log fold change, RMSE and RMSE rank of the mean expression profile, MMD and DEG recall for held-out K562 CRISPRa dual-gene perturbations (Norman19), for CPA, SAMS-VAE, Biolord, GEARS, Latent Additive (with and without scGPT embeddings), Decoder and Linear models

The protocol compares perturbation-response models and simple baselines on the same held-out dual perturbations, which is the methods-and-controls comparison the use case asks for. It is proxy evidence because the endpoint is expression agreement, not experimental prioritisation.

11 reviewed evaluations

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

19 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-23-5347695500ed
Property and statement	Original source and location	Review and provenance
Citation locations 1 values source id lit-cells-networks-20261011-perturbench-v4-source-wu2025 locator Tables 3 and 6; Section 4.2; Appendix D.4-D.5 Context-only references	PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) Original source ↗ lit-cells-networks-20261011-perturbench-v4-source-wu2025: Tables 3 and 6; Section 4.2; Appendix D.4-D.5 Version: arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version) Retrieved: 2026-10-11T21:29:35Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.citation_locators` Source artifact SHA-256: `b73f2644b129ca209b69812ad467d595e15c283f6cae5c3c9bbc5a4c5870996a` Hash scope: Exact bytes of the arXiv HTML rendering of v4 as retrieved; arXiv may regenerate HTML, so the hash describes this retrieval. Inspected artifact
Comparison group perturbench-v4 Context-only references	PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) Original source ↗ lit-cells-networks-20261011-perturbench-v4-source-wu2025: Tables 3 and 6; Section 4.2; Appendix D.4-D.5 Version: arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version) Retrieved: 2026-10-11T21:29:35Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.comparison_group` Source artifact SHA-256: `b73f2644b129ca209b69812ad467d595e15c283f6cae5c3c9bbc5a4c5870996a` Hash scope: Exact bytes of the arXiv HTML rendering of v4 as retrieved; arXiv may regenerate HTML, so the hash describes this retrieval. Inspected artifact
Comparison title PerturBench v4 (Wu et al., NeurIPS 2025 Datasets and Benchmarks) Context-only references	PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) Original source ↗ lit-cells-networks-20261011-perturbench-v4-source-wu2025: Tables 3 and 6; Section 4.2; Appendix D.4-D.5 Version: arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version) Retrieved: 2026-10-11T21:29:35Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.comparison_title` Source artifact SHA-256: `b73f2644b129ca209b69812ad467d595e15c283f6cae5c3c9bbc5a4c5870996a` Hash scope: Exact bytes of the arXiv HTML rendering of v4 as retrieved; arXiv may regenerate HTML, so the hash describes this retrieval. Inspected artifact
Constraints 3 values Inspect every linked evaluation's source locator before citing a result. Compare models only within one table column; MMD, MMD PCA and DEG recall are not printed ('-') for the CPA* (scGPT), LA (scGPT) and GEARS rows, and DEG recall is not printed for the Decoder row. Do not combine these values with PerturBench v1 results (evidence-expansion-perturbench-5c480456): v4 reran the models and the numbers differ. Context-only references	PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) Original source ↗ lit-cells-networks-20261011-perturbench-v4-source-wu2025: Tables 3 and 6; Section 4.2; Appendix D.4-D.5 Version: arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version) Retrieved: 2026-10-11T21:29:35Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.constraints` Source artifact SHA-256: `b73f2644b129ca209b69812ad467d595e15c283f6cae5c3c9bbc5a4c5870996a` Hash scope: Exact bytes of the arXiv HTML rendering of v4 as retrieved; arXiv may regenerate HTML, so the hash describes this retrieval. Inspected artifact
Endpoint Cosine similarity and rank of predicted log fold change, RMSE and RMSE rank of the mean expression profile, MMD and DEG recall for held-out K562 CRISPRa dual-gene perturbations (Norman19), for CPA, SAMS-VAE, Biolord, GEARS, Latent Additive (with and without scGPT embeddings), Decoder and Linear models Context-only references	PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) Original source ↗ lit-cells-networks-20261011-perturbench-v4-source-wu2025: Tables 3 and 6; Section 4.2; Appendix D.4-D.5 Version: arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version) Retrieved: 2026-10-11T21:29:35Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.endpoint` Source artifact SHA-256: `b73f2644b129ca209b69812ad467d595e15c283f6cae5c3c9bbc5a4c5870996a` Hash scope: Exact bytes of the arXiv HTML rendering of v4 as retrieved; arXiv may regenerate HTML, so the hash describes this retrieval. Inspected artifact
Claimed field links:assessed_by:lit-cells-networks-20261011-perturbench-v4-protocol-norman19 Context-only references	PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) Original source ↗ lit-cells-networks-20261011-perturbench-v4-source-wu2025: Tables 3 and 6; Section 4.2; Appendix D.4-D.5 Version: arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version) Retrieved: 2026-10-11T21:29:35Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `b73f2644b129ca209b69812ad467d595e15c283f6cae5c3c9bbc5a4c5870996a` Hash scope: Exact bytes of the arXiv HTML rendering of v4 as retrieved; arXiv may regenerate HTML, so the hash describes this retrieval. Inspected artifact
Headline metric perturbench-cosine-logfc Context-only references	PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) Original source ↗ lit-cells-networks-20261011-perturbench-v4-source-wu2025: Tables 3 and 6; Section 4.2; Appendix D.4-D.5 Version: arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version) Retrieved: 2026-10-11T21:29:35Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.headline_metric` Source artifact SHA-256: `b73f2644b129ca209b69812ad467d595e15c283f6cae5c3c9bbc5a4c5870996a` Hash scope: Exact bytes of the arXiv HTML rendering of v4 as retrieved; arXiv may regenerate HTML, so the hash describes this retrieval. Inspected artifact
Limitations 5 values The PerturBench authors trained and tuned every model themselves and developed the Linear, Latent Additive and Decoder baselines; CPA, SAMS-VAE, Biolord and GEARS are their reimplementations or wrappers. Preprint (arXiv v4 of the NeurIPS 2025 Datasets and Benchmarks paper); the proceedings version was not compared. Spread is one standard deviation over 5 training seeds of one HPO-selected configuration, not over data splits. Expression-prediction scores do not establish causal mechanism or experimental hit rates (use-case exclusion). GEARS rows have no MMD or DEG recall (printed '-'). Context-only references	PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) Original source ↗ lit-cells-networks-20261011-perturbench-v4-source-wu2025: Tables 3 and 6; Section 4.2; Appendix D.4-D.5 Version: arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version) Retrieved: 2026-10-11T21:29:35Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.limitations` Source artifact SHA-256: `b73f2644b129ca209b69812ad467d595e15c283f6cae5c3c9bbc5a4c5870996a` Hash scope: Exact bytes of the arXiv HTML rendering of v4 as retrieved; arXiv may regenerate HTML, so the hash describes this retrieval. Inspected artifact
Pinned records 81 values record id lit-cells-networks-20261011-perturbench-v4-eval-norman19-biolord fields status links attributes.origin attributes.comparison sha256 2c9f63078ae6f75ce7d8578583334acb18721527c5ea83de43963713330f3fe9 record id lit-cells-networks-20261011-perturbench-v4-eval-norman19-cpa fields status links attributes.origin attributes.comparison sha256 47556b6baa6c23fc6c9e003c7adee0154bab84194c56ab5d4984194014a1baa5 record id lit-cells-networks-20261011-perturbench-v4-eval-norman19-cpa-noadv fields status links attributes.origin attributes.comparison sha256 5efd1efb6a1d01e7f340064577acb885d6b0a4ad129af00d34cc514b0e24e8a9 record id lit-cells-networks-20261011-perturbench-v4-eval-norman19-cpa-scgpt fields status links attributes.origin attributes.comparison sha256 9fc6564ef599cfc87fac97a5b599b86e9d3a2ca37c63886b4b5cfbdcbc4d9efc record id lit-cells-networks-20261011-perturbench-v4-eval-norman19-decoder fields status links attributes.origin attributes.comparison sha256 4117a8a279ac02bb7ebc0e5668996f528c6ee7c8d7bc5f0806d8794ed9d3b30f record id lit-cells-networks-20261011-perturbench-v4-eval-norman19-gears-perturbench-norman19-run fields status links attributes.origin attributes.comparison sha256 459009fbae04aaa4ba62907c76b13c10e63ef094bf9204580ee15d4f8a195c82 record id lit-cells-networks-20261011-perturbench-v4-eval-norman19-la fields status links attributes.origin attributes.comparison sha256 6344f5fdbece0e1861973ae715b202d595dffafe8c1291a2eb590eab7e6e0298 record id lit-cells-networks-20261011-perturbench-v4-eval-norman19-la-scgpt fields status links attributes.origin attributes.comparison sha256 2d76e7d839aaaa95533857f22dc3c9397ec70c81e197e9a8f98ca06f73bed54d record id lit-cells-networks-20261011-perturbench-v4-eval-norman19-linear fields status links attributes.origin attributes.comparison sha256 268c7da1f5a6af7c23fb3b5ed2cb5b2f40b341c4593c407ec95ec72c52e4775c record id lit-cells-networks-20261011-perturbench-v4-eval-norman19-sams-vae fields status links attributes.origin attributes.comparison sha256 0752bc492c5edbcbbddf4bd438ee767fcbc19aff3f3117181d7be29c98a75951 record id lit-cells-networks-20261011-perturbench-v4-eval-norman19-sams-vae-s fields status links attributes.origin attributes.comparison sha256 347a42686265dcff1d9c763fd6e1dbe0333bbea93e30bcd1f1532593f5eac9b2 record id lit-cells-networks-20261011-perturbench-v4-protocol-norman19 fields status name description facets source_ids links attributes sha256 d3635f8ff1013b5873ae7a0cd04a6dd569446fe6d4223c371c9311d63d5681b2 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-biolord-cosine-logfc-rank-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 2d8ce875eeb0ea96182f1b263238d87b0173bbaa82dc108d5d0a9243656c9c74 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-biolord-cosine-logfc-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 b368dce232a96a1322fe9ffdaa9f76a451c4eb98dd68acc5d6386f77149d6a6b record id lit-cells-networks-20261011-perturbench-v4-result-norman19-biolord-deg-recall-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 5d530393607e334a1bf19b784af747e79415854eb8fb48f0829bc225fb2169fd record id lit-cells-networks-20261011-perturbench-v4-result-norman19-biolord-mmd-pca-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 15679a053da667fa14140c67cb17c5203acc3210cf177841bcab5eef42d83fe7 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-biolord-mmd-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 b98b971aab5b714bb00dd8a7e4b8528e50ad05bcf8d4bfff42663df300193e31 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-biolord-rmse-mean-rank-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 dc0f8584d8d9303bdaf90345380d68ceb044452840bc4b10067ae3acf67ac174 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-biolord-rmse-mean-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 adea36553e2ac5fda19ebc1c63ea5466ecbc3c8fb7ae44e88a979de6f6bd1a33 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-cosine-logfc-rank-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 46dbf72aa405c1c603ef3a611076cd4f9db4a2f7eec576352b2351f27f1cdb0a record id lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-cosine-logfc-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 dcc3d5e20099d994f05a161243bf0de9599fd97aa52e29eff9f53c02a7972dae record id lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-deg-recall-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 697745e408e52cab7b66f57acd7ffa606f880a7351593d58c0362b41da75d1bb record id lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-mmd-pca-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 a71825264a82f1e7dbb5892ce4d43d14d68c3df228fc030babc14592f08bd636 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-mmd-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 62276b47df723676f47c5996ea137cfa3721783baed5a5b5fc39e1c3bdb90a3d record id lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-noadv-cosine-logfc-rank-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 57aa789e5249c5ad249ab501eafa7e1e17657e835b8d60f956bdf9a07773a833 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-noadv-cosine-logfc-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 4b6df9a394dfeec4d1f590c7259b1a00203d0d10d48894d596dd50154a84e8a5 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-noadv-deg-recall-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 4854782c6512345e16ebb882553f8b5de21b2bb22ab118bfcab0320a71842530 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-noadv-mmd-pca-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 f318a1cbe37110e505d86757153c3f8aabf9a97d14417516d52b548de4381630 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-noadv-mmd-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 dcb9309efb37e9115735038b9c10d9fdb0d84f9704f0f99346f3c1b2c5d2d574 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-noadv-rmse-mean-rank-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 725a6fa7ca5b1c58340f49d9f7d689fa97425f8e02ce3ffdf756df0723672b35 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-noadv-rmse-mean-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 b0a6c9370669d79664c74fb9f99ed046046f7454fb4737535ebbc5afd3e35bd2 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-rmse-mean-rank-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 7b438b912cc073116743e737c72bec1d93895e1fffeeca4b38892301ec17dc84 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-rmse-mean-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 8fdf3b7a6e6b22a4d4ff182611ff2c0e0053befb5698c1f8f9c6cdcbff5c7d85 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-scgpt-cosine-logfc-rank-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 e04b284603d4bfd9a11df8b3bcc2db4556b0a3c7a744abca26f9ae85fa5ac946 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-scgpt-cosine-logfc-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 947ae41dc9321199cc65f6bafdd5cf74586ab80d43a753df4ecacfb4785b19ff record id lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-scgpt-rmse-mean-rank-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 075b311e5dcbf256f52dd8ae7f18795bbea617f8e51770aac4a2b3779e64ce3a record id lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-scgpt-rmse-mean-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 33f8337c6351f9d49fa4150474d324604ffa162a37511c38755b4f4b0ecdf50b record id lit-cells-networks-20261011-perturbench-v4-result-norman19-decoder-cosine-logfc-rank-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 7921a51560ac16ec7a44c077b9c1af5220aaa3966a0007457fff35ced944c1f7 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-decoder-cosine-logfc-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 837b4f2241f855bd93caadbf1284ac84733a763f50e92c2a6a52d15b8b2abebb record id lit-cells-networks-20261011-perturbench-v4-result-norman19-decoder-mmd-pca-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 e969e4b20443080b5f366749ef2d43579eb9fc9969f0830df06b46c76bb3283c record id lit-cells-networks-20261011-perturbench-v4-result-norman19-decoder-mmd-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 186146b70bd2ab0ab7e71da0cd9172fa220b595505d545f35786ee4a1ce12ecb record id lit-cells-networks-20261011-perturbench-v4-result-norman19-decoder-rmse-mean-rank-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 73427b857bc18b3ffc3e1e9895f4d1d8a593b4ba9839ee267dbc7daa88983ef1 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-decoder-rmse-mean-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 dab5caaf80fb2fe88a155d9e829f163df6fb25b764418861aca91db494d0f0df record id lit-cells-networks-20261011-perturbench-v4-result-norman19-gears-cosine-logfc-rank-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 39814fc49de5ef6868d8e51d0b73052c990419b688e06f5b056b1af59c7bde24 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-gears-cosine-logfc-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 5af345605bcf994944a2544492df9a6aca9a1a79716d312b1f8ab4a1ea7cad06 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-gears-rmse-mean-rank-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 86dc6607da40c489dc0e32eb754763eeb5464cc70f3eaae926af2987642c93ee record id lit-cells-networks-20261011-perturbench-v4-result-norman19-gears-rmse-mean-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 b233d1b42f6a535cf015c9b3a736cc389c7e4fa1aac8357429bf9547b2f1d0fd record id lit-cells-networks-20261011-perturbench-v4-result-norman19-la-cosine-logfc-rank-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 7ec3a4749d34e7fa32585df42dbd1de6ae7d07094333143d491478a4dc273480 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-la-cosine-logfc-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 afaa5c372a6d3eb732c59976fd27dd84794cc21efc85a7f335ed5471e771a95a record id lit-cells-networks-20261011-perturbench-v4-result-norman19-la-deg-recall-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 214c34b0a5fd682e6fd288d4b344e7e2b3885fb3ccbe9c1ee6a8fda408f473f7 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-la-mmd-pca-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 e89d4ef3f8d40478cd7261b21e59cbadbb7920301e8e60d5a6e0177043baff6f record id lit-cells-networks-20261011-perturbench-v4-result-norman19-la-mmd-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 f487e4610b3ae9b0a6185c2758bdd15921a8b6d09749c5e440ffc10087791589 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-la-rmse-mean-rank-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 f32b917afa0bd7d109b65c0d268c41f86f85eca140001bd697de5d0ca013c30b record id lit-cells-networks-20261011-perturbench-v4-result-norman19-la-rmse-mean-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 8928574169c6f9e0744b1d63da64abc8b92428a7981f690448bf4df4d71cf1b4 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-la-scgpt-cosine-logfc-rank-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 306f6f104b98a3653c6d802810301938e45b68a863e396728ec09893764303ec record id lit-cells-networks-20261011-perturbench-v4-result-norman19-la-scgpt-cosine-logfc-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 007ff999deb90e201db0daeb252898e8b0391ff5e71f5e5dccadc5dc1467c915 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-la-scgpt-rmse-mean-rank-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 3173d7cafa3adcafe63f038f5aa6bb18ccfebaae2eda152f3079d647f4ceb3ad record id lit-cells-networks-20261011-perturbench-v4-result-norman19-la-scgpt-rmse-mean-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 3faf4bb424977ce88c8763f4747612a8bbfb4209da3ab31b4f1e8803cc8556fe record id lit-cells-networks-20261011-perturbench-v4-result-norman19-linear-cosine-logfc-rank-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 158a9d97d5ebd538ba8434998cc1ffd862484ef2ceced6d562f6e9fbffe2503e record id lit-cells-networks-20261011-perturbench-v4-result-norman19-linear-cosine-logfc-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 ff4f1f1479df072a4c3097541a0372b53e63ca97641e6cc6693edc926c7e5060 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-linear-deg-recall-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 4c8f2c605dfb15acc34c863f1e5cb6f53783fb09870e630abe9c4a8ab3c33332 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-linear-mmd-pca-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 6523ac40cadb1dff74ade45528960d0ff0fb67d57ce69fa4b5ae830fdc6e3676 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-linear-mmd-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 9cdc7eec63255c2b632991d4dc16f22986e8d0f7a628561feb736e0f87194257 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-linear-rmse-mean-rank-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 9254d7ce9de392340ce874ead4081ada28915521ba6a695e1868d84e7246fdfb record id lit-cells-networks-20261011-perturbench-v4-result-norman19-linear-rmse-mean-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 f16c2da720420d5c632ed2fedec17c7c197cb4267dadbb17e1ed727eff124430 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-cosine-logfc-rank-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 ebf914d8653364bea45492d5341337584a4555e3c48d54dd85138c786dfa16b8 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-cosine-logfc-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 9fba8fd150ebea292af52bb7bbeab7adc0df4d653f9d3b6a32d434b83ab39723 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-deg-recall-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 5d530393607e334a1bf19b784af747e79415854eb8fb48f0829bc225fb2169fd record id lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-mmd-pca-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 1baab3a918824c82965386f27fb5e32814e02f86e92e30e5e2b9aba3a30fe498 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-mmd-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 5752fe89f67e2889d405d2f5f5e717767ec9e330a7222cefdd5fec0c86e15bc6 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-rmse-mean-rank-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 b7a69df212b70fdbf8119d7b7dbafc30b4b11985f3073af7845a19342c6a3c94 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-rmse-mean-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 60ffaf558c62da0b0d62e4fce44e4d6cdfc06c43482b0f2d92ee84cfd3ab608d record id lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-s-cosine-logfc-rank-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 12f4cdcb6183d9893320e8f1efbbe65e4d7ba70320420899376cb3824bb5aa97 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-s-cosine-logfc-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 fcad19734d8f3dac5cd301276960538775ffab88f88ff7e0d8a55118dd87dde6 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-s-deg-recall-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 90627a08c964569b7bf5d42ecd15c80c6e89f078c1013b1843d24eaf563f86ff record id lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-s-mmd-pca-t3 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 0409f7e66ecef208793a7db06c04321599c23a96fe41e6c5305d9243b90d483f record id lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-s-mmd-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 027dd7c5611e24d67e5c7a8ade0f706c4d36a1ff084a833473644a23971aaff0 record id lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-s-rmse-mean-rank-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 bd15181f2f1ef18e841873c6c0b3fcf677c165a636908e6afd5f6247351162ef record id lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-s-rmse-mean-t6 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 1ee56febf896ab02fe4e0860e10ade923b0258f750b95a48d24ac8edbf1c12b4 record id lit-cells-networks-20261011-perturbench-v4-source-wu2025 fields status attributes.artifact_sha256 sha256 bc98d4e6b3b80d990360172fedcd5e732535fb03f9d40ca0c85eb22d132e5aab record id use-case-genetic-perturbation-response fields status name description facets attributes.question attributes.decision attributes.inputs attributes.output attributes.exclusions attributes.setting attributes.clinical_scope attributes.intended_users sha256 440f0f2e30cb7c828212bed728de2420ba8e13521280be58be7bdcdfe57ac973 Context-only references	PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) Original source ↗ lit-cells-networks-20261011-perturbench-v4-source-wu2025: Tables 3 and 6; Section 4.2; Appendix D.4-D.5 Version: arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version) Retrieved: 2026-10-11T21:29:35Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.pins` Source artifact SHA-256: `b73f2644b129ca209b69812ad467d595e15c283f6cae5c3c9bbc5a4c5870996a` Hash scope: Exact bytes of the arXiv HTML rendering of v4 as retrieved; arXiv may regenerate HTML, so the hash describes this retrieval. Inspected artifact
Rationale The protocol compares perturbation-response models and simple baselines on the same held-out dual perturbations, which is the methods-and-controls comparison the use case asks for. It is proxy evidence because the endpoint is expression agreement, not experimental prioritisation. Context-only references	PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) Original source ↗ lit-cells-networks-20261011-perturbench-v4-source-wu2025: Tables 3 and 6; Section 4.2; Appendix D.4-D.5 Version: arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version) Retrieved: 2026-10-11T21:29:35Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.rationale` Source artifact SHA-256: `b73f2644b129ca209b69812ad467d595e15c283f6cae5c3c9bbc5a4c5870996a` Hash scope: Exact bytes of the arXiv HTML rendering of v4 as retrieved; arXiv may regenerate HTML, so the hash describes this retrieval. Inspected artifact

How to read the evidence

Sources and history

Release 2026-10-23-5347695500ed · Record review: source checked

1 source record and release history

PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis (arXiv v4) · Original source · arXiv 2408.10609v4, posted 2025-10-24 (NeurIPS 2025 Datasets and Benchmarks Track version)

Download this release (gzip)

Technical metadata and extraction receipts

Stable ID: use-case-mapping-lit-cells-networks-20261011-perturbench-v4-norman19

field: links:assessed_by:lit-cells-networks-20261011-perturbench-v4-protocol-norman19
value: lit-cells-networks-20261011-perturbench-v4-protocol-norman19
relevance: proxy
endpoint: Cosine similarity and rank of predicted log fold change, RMSE and RMSE rank of the mean expression profile, MMD and DEG recall for held-out K562 CRISPRa dual-gene perturbations (Norman19), for CPA, SAMS-VAE, Biolord, GEARS, Latent Additive (with and without scGPT embeddings), Decoder and Linear models
rationale: The protocol compares perturbation-response models and simple baselines on the same held-out dual perturbations, which is the methods-and-controls comparison the use case asks for. It is proxy evidence because the endpoint is expression agreement, not experimental prioritisation.
constraints: Inspect every linked evaluation's source locator before citing a result.; Compare models only within one table column; MMD, MMD PCA and DEG recall are not printed ('-') for the CPA* (scGPT), LA (scGPT) and GEARS rows, and DEG recall is not printed for the Decoder row.; Do not combine these values with PerturBench v1 results (evidence-expansion-perturbench-5c480456): v4 reran the models and the numbers differ.
limitations: The PerturBench authors trained and tuned every model themselves and developed the Linear, Latent Additive and Decoder baselines; CPA, SAMS-VAE, Biolord and GEARS are their reimplementations or wrappers.; Preprint (arXiv v4 of the NeurIPS 2025 Datasets and Benchmarks paper); the proceedings version was not compared.; Spread is one standard deviation over 5 training seeds of one HPO-selected configuration, not over data splits.; Expression-prediction scores do not establish causal mechanism or experimental hit rates (use-case exclusion).; GEARS rows have no MMD or DEG recall (printed '-').
citation locators: source id: lit-cells-networks-20261011-perturbench-v4-source-wu2025; locator: Tables 3 and 6; Section 4.2; Appendix D.4-D.5
source locator: lit-cells-networks-20261011-perturbench-v4-source-wu2025: Tables 3 and 6; Section 4.2; Appendix D.4-D.5
headline metric: perturbench-cosine-logfc
comparison group: perturbench-v4
comparison title: PerturBench v4 (Wu et al., NeurIPS 2025 Datasets and Benchmarks)
stratum label: Norman19 dual perturbations (K562 CRISPRa)
stratum order: 1
reviewed evaluations: lit-cells-networks-20261011-perturbench-v4-eval-norman19-biolord; lit-cells-networks-20261011-perturbench-v4-eval-norman19-cpa; lit-cells-networks-20261011-perturbench-v4-eval-norman19-cpa-noadv; lit-cells-networks-20261011-perturbench-v4-eval-norman19-cpa-scgpt; lit-cells-networks-20261011-perturbench-v4-eval-norman19-decoder; lit-cells-networks-20261011-perturbench-v4-eval-norman19-gears-perturbench-norman19-run; lit-cells-networks-20261011-perturbench-v4-eval-norman19-la; lit-cells-networks-20261011-perturbench-v4-eval-norman19-la-scgpt; lit-cells-networks-20261011-perturbench-v4-eval-norman19-linear; lit-cells-networks-20261011-perturbench-v4-eval-norman19-sams-vae; lit-cells-networks-20261011-perturbench-v4-eval-norman19-sams-vae-s
reason: Add a relevance judgement for a protocol from the 2026-10-11 cells-spatial and networks-mechanistic literature pass, reviewed in docs/reviews/2026-10-12-cells-networks-batches.md.
review: method: ai-assisted-source-review; scope-review; method note: Reviewer checked the endpoint against the use case's inputs, output and exclusions, the relevance rating and the limitations; every evaluation on the protocol had its values checked in the batch review. Corrections listed in review.md were applied by the extractor.; reviewer: claude; reviewer note: Claude review agent reviewer-cn-2, independent of the extractor lit-cells-networks; no human review claimed; reviewed at: 2026-10-12T08:44:00Z; note: Automated review; not human scientific review.
pins: record id: lit-cells-networks-20261011-perturbench-v4-eval-norman19-biolord; fields: status; links; attributes.origin; attributes.comparison; sha256: 2c9f63078ae6f75ce7d8578583334acb18721527c5ea83de43963713330f3fe9; record id: lit-cells-networks-20261011-perturbench-v4-eval-norman19-cpa; fields: status; links; attributes.origin; attributes.comparison; sha256: 47556b6baa6c23fc6c9e003c7adee0154bab84194c56ab5d4984194014a1baa5; record id: lit-cells-networks-20261011-perturbench-v4-eval-norman19-cpa-noadv; fields: status; links; attributes.origin; attributes.comparison; sha256: 5efd1efb6a1d01e7f340064577acb885d6b0a4ad129af00d34cc514b0e24e8a9; record id: lit-cells-networks-20261011-perturbench-v4-eval-norman19-cpa-scgpt; fields: status; links; attributes.origin; attributes.comparison; sha256: 9fc6564ef599cfc87fac97a5b599b86e9d3a2ca37c63886b4b5cfbdcbc4d9efc; record id: lit-cells-networks-20261011-perturbench-v4-eval-norman19-decoder; fields: status; links; attributes.origin; attributes.comparison; sha256: 4117a8a279ac02bb7ebc0e5668996f528c6ee7c8d7bc5f0806d8794ed9d3b30f; record id: lit-cells-networks-20261011-perturbench-v4-eval-norman19-gears-perturbench-norman19-run; fields: status; links; attributes.origin; attributes.comparison; sha256: 459009fbae04aaa4ba62907c76b13c10e63ef094bf9204580ee15d4f8a195c82; record id: lit-cells-networks-20261011-perturbench-v4-eval-norman19-la; fields: status; links; attributes.origin; attributes.comparison; sha256: 6344f5fdbece0e1861973ae715b202d595dffafe8c1291a2eb590eab7e6e0298; record id: lit-cells-networks-20261011-perturbench-v4-eval-norman19-la-scgpt; fields: status; links; attributes.origin; attributes.comparison; sha256: 2d76e7d839aaaa95533857f22dc3c9397ec70c81e197e9a8f98ca06f73bed54d; record id: lit-cells-networks-20261011-perturbench-v4-eval-norman19-linear; fields: status; links; attributes.origin; attributes.comparison; sha256: 268c7da1f5a6af7c23fb3b5ed2cb5b2f40b341c4593c407ec95ec72c52e4775c; record id: lit-cells-networks-20261011-perturbench-v4-eval-norman19-sams-vae; fields: status; links; attributes.origin; attributes.comparison; sha256: 0752bc492c5edbcbbddf4bd438ee767fcbc19aff3f3117181d7be29c98a75951; record id: lit-cells-networks-20261011-perturbench-v4-eval-norman19-sams-vae-s; fields: status; links; attributes.origin; attributes.comparison; sha256: 347a42686265dcff1d9c763fd6e1dbe0333bbea93e30bcd1f1532593f5eac9b2; record id: lit-cells-networks-20261011-perturbench-v4-protocol-norman19; fields: status; name; description; facets; source_ids; links; attributes; sha256: d3635f8ff1013b5873ae7a0cd04a6dd569446fe6d4223c371c9311d63d5681b2; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-biolord-cosine-logfc-rank-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 2d8ce875eeb0ea96182f1b263238d87b0173bbaa82dc108d5d0a9243656c9c74; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-biolord-cosine-logfc-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: b368dce232a96a1322fe9ffdaa9f76a451c4eb98dd68acc5d6386f77149d6a6b; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-biolord-deg-recall-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 5d530393607e334a1bf19b784af747e79415854eb8fb48f0829bc225fb2169fd; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-biolord-mmd-pca-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 15679a053da667fa14140c67cb17c5203acc3210cf177841bcab5eef42d83fe7; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-biolord-mmd-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: b98b971aab5b714bb00dd8a7e4b8528e50ad05bcf8d4bfff42663df300193e31; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-biolord-rmse-mean-rank-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: dc0f8584d8d9303bdaf90345380d68ceb044452840bc4b10067ae3acf67ac174; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-biolord-rmse-mean-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: adea36553e2ac5fda19ebc1c63ea5466ecbc3c8fb7ae44e88a979de6f6bd1a33; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-cosine-logfc-rank-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 46dbf72aa405c1c603ef3a611076cd4f9db4a2f7eec576352b2351f27f1cdb0a; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-cosine-logfc-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: dcc3d5e20099d994f05a161243bf0de9599fd97aa52e29eff9f53c02a7972dae; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-deg-recall-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 697745e408e52cab7b66f57acd7ffa606f880a7351593d58c0362b41da75d1bb; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-mmd-pca-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: a71825264a82f1e7dbb5892ce4d43d14d68c3df228fc030babc14592f08bd636; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-mmd-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 62276b47df723676f47c5996ea137cfa3721783baed5a5b5fc39e1c3bdb90a3d; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-noadv-cosine-logfc-rank-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 57aa789e5249c5ad249ab501eafa7e1e17657e835b8d60f956bdf9a07773a833; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-noadv-cosine-logfc-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 4b6df9a394dfeec4d1f590c7259b1a00203d0d10d48894d596dd50154a84e8a5; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-noadv-deg-recall-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 4854782c6512345e16ebb882553f8b5de21b2bb22ab118bfcab0320a71842530; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-noadv-mmd-pca-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: f318a1cbe37110e505d86757153c3f8aabf9a97d14417516d52b548de4381630; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-noadv-mmd-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: dcb9309efb37e9115735038b9c10d9fdb0d84f9704f0f99346f3c1b2c5d2d574; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-noadv-rmse-mean-rank-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 725a6fa7ca5b1c58340f49d9f7d689fa97425f8e02ce3ffdf756df0723672b35; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-noadv-rmse-mean-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: b0a6c9370669d79664c74fb9f99ed046046f7454fb4737535ebbc5afd3e35bd2; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-rmse-mean-rank-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 7b438b912cc073116743e737c72bec1d93895e1fffeeca4b38892301ec17dc84; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-rmse-mean-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 8fdf3b7a6e6b22a4d4ff182611ff2c0e0053befb5698c1f8f9c6cdcbff5c7d85; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-scgpt-cosine-logfc-rank-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: e04b284603d4bfd9a11df8b3bcc2db4556b0a3c7a744abca26f9ae85fa5ac946; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-scgpt-cosine-logfc-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 947ae41dc9321199cc65f6bafdd5cf74586ab80d43a753df4ecacfb4785b19ff; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-scgpt-rmse-mean-rank-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 075b311e5dcbf256f52dd8ae7f18795bbea617f8e51770aac4a2b3779e64ce3a; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-cpa-scgpt-rmse-mean-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 33f8337c6351f9d49fa4150474d324604ffa162a37511c38755b4f4b0ecdf50b; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-decoder-cosine-logfc-rank-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 7921a51560ac16ec7a44c077b9c1af5220aaa3966a0007457fff35ced944c1f7; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-decoder-cosine-logfc-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 837b4f2241f855bd93caadbf1284ac84733a763f50e92c2a6a52d15b8b2abebb; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-decoder-mmd-pca-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: e969e4b20443080b5f366749ef2d43579eb9fc9969f0830df06b46c76bb3283c; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-decoder-mmd-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 186146b70bd2ab0ab7e71da0cd9172fa220b595505d545f35786ee4a1ce12ecb; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-decoder-rmse-mean-rank-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 73427b857bc18b3ffc3e1e9895f4d1d8a593b4ba9839ee267dbc7daa88983ef1; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-decoder-rmse-mean-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: dab5caaf80fb2fe88a155d9e829f163df6fb25b764418861aca91db494d0f0df; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-gears-cosine-logfc-rank-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 39814fc49de5ef6868d8e51d0b73052c990419b688e06f5b056b1af59c7bde24; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-gears-cosine-logfc-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 5af345605bcf994944a2544492df9a6aca9a1a79716d312b1f8ab4a1ea7cad06; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-gears-rmse-mean-rank-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 86dc6607da40c489dc0e32eb754763eeb5464cc70f3eaae926af2987642c93ee; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-gears-rmse-mean-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: b233d1b42f6a535cf015c9b3a736cc389c7e4fa1aac8357429bf9547b2f1d0fd; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-la-cosine-logfc-rank-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 7ec3a4749d34e7fa32585df42dbd1de6ae7d07094333143d491478a4dc273480; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-la-cosine-logfc-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: afaa5c372a6d3eb732c59976fd27dd84794cc21efc85a7f335ed5471e771a95a; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-la-deg-recall-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 214c34b0a5fd682e6fd288d4b344e7e2b3885fb3ccbe9c1ee6a8fda408f473f7; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-la-mmd-pca-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: e89d4ef3f8d40478cd7261b21e59cbadbb7920301e8e60d5a6e0177043baff6f; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-la-mmd-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: f487e4610b3ae9b0a6185c2758bdd15921a8b6d09749c5e440ffc10087791589; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-la-rmse-mean-rank-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: f32b917afa0bd7d109b65c0d268c41f86f85eca140001bd697de5d0ca013c30b; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-la-rmse-mean-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 8928574169c6f9e0744b1d63da64abc8b92428a7981f690448bf4df4d71cf1b4; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-la-scgpt-cosine-logfc-rank-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 306f6f104b98a3653c6d802810301938e45b68a863e396728ec09893764303ec; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-la-scgpt-cosine-logfc-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 007ff999deb90e201db0daeb252898e8b0391ff5e71f5e5dccadc5dc1467c915; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-la-scgpt-rmse-mean-rank-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 3173d7cafa3adcafe63f038f5aa6bb18ccfebaae2eda152f3079d647f4ceb3ad; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-la-scgpt-rmse-mean-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 3faf4bb424977ce88c8763f4747612a8bbfb4209da3ab31b4f1e8803cc8556fe; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-linear-cosine-logfc-rank-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 158a9d97d5ebd538ba8434998cc1ffd862484ef2ceced6d562f6e9fbffe2503e; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-linear-cosine-logfc-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: ff4f1f1479df072a4c3097541a0372b53e63ca97641e6cc6693edc926c7e5060; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-linear-deg-recall-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 4c8f2c605dfb15acc34c863f1e5cb6f53783fb09870e630abe9c4a8ab3c33332; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-linear-mmd-pca-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 6523ac40cadb1dff74ade45528960d0ff0fb67d57ce69fa4b5ae830fdc6e3676; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-linear-mmd-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 9cdc7eec63255c2b632991d4dc16f22986e8d0f7a628561feb736e0f87194257; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-linear-rmse-mean-rank-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 9254d7ce9de392340ce874ead4081ada28915521ba6a695e1868d84e7246fdfb; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-linear-rmse-mean-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: f16c2da720420d5c632ed2fedec17c7c197cb4267dadbb17e1ed727eff124430; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-cosine-logfc-rank-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: ebf914d8653364bea45492d5341337584a4555e3c48d54dd85138c786dfa16b8; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-cosine-logfc-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 9fba8fd150ebea292af52bb7bbeab7adc0df4d653f9d3b6a32d434b83ab39723; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-deg-recall-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 5d530393607e334a1bf19b784af747e79415854eb8fb48f0829bc225fb2169fd; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-mmd-pca-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 1baab3a918824c82965386f27fb5e32814e02f86e92e30e5e2b9aba3a30fe498; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-mmd-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 5752fe89f67e2889d405d2f5f5e717767ec9e330a7222cefdd5fec0c86e15bc6; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-rmse-mean-rank-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: b7a69df212b70fdbf8119d7b7dbafc30b4b11985f3073af7845a19342c6a3c94; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-rmse-mean-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 60ffaf558c62da0b0d62e4fce44e4d6cdfc06c43482b0f2d92ee84cfd3ab608d; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-s-cosine-logfc-rank-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 12f4cdcb6183d9893320e8f1efbbe65e4d7ba70320420899376cb3824bb5aa97; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-s-cosine-logfc-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: fcad19734d8f3dac5cd301276960538775ffab88f88ff7e0d8a55118dd87dde6; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-s-deg-recall-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 90627a08c964569b7bf5d42ecd15c80c6e89f078c1013b1843d24eaf563f86ff; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-s-mmd-pca-t3; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 0409f7e66ecef208793a7db06c04321599c23a96fe41e6c5305d9243b90d483f; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-s-mmd-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 027dd7c5611e24d67e5c7a8ade0f706c4d36a1ff084a833473644a23971aaff0; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-s-rmse-mean-rank-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: bd15181f2f1ef18e841873c6c0b3fcf677c165a636908e6afd5f6247351162ef; record id: lit-cells-networks-20261011-perturbench-v4-result-norman19-sams-vae-s-rmse-mean-t6; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 1ee56febf896ab02fe4e0860e10ade923b0258f750b95a48d24ac8edbf1c12b4; record id: lit-cells-networks-20261011-perturbench-v4-source-wu2025; fields: status; attributes.artifact_sha256; sha256: bc98d4e6b3b80d990360172fedcd5e732535fb03f9d40ca0c85eb22d132e5aab; record id: use-case-genetic-perturbation-response; fields: status; name; description; facets; attributes.question; attributes.decision; attributes.inputs; attributes.output; attributes.exclusions; attributes.setting; attributes.clinical_scope; attributes.intended_users; sha256: 440f0f2e30cb7c828212bed728de2420ba8e13521280be58be7bdcdfe57ac973

Related records

subject: Assess models for genetic perturbation experiments

Suggest a correction