Evidence claim

Relevance of ATAA held-out annotation to "Transfer cell-type annotations to a new dataset"

Use case: Transfer cell-type annotations to a new dataset
Assessed by: Chen et al. 2026 supervised cell type annotation, ATAA
Relevance: Proxy evidence
Endpoint: Accuracy, precision, recall, macro-F1, PR-AUC and ROC-AUC of supervised cell type annotation on a stratified held-out split of ATAA

Scores foundation models fine-tuned on reference labels and tested on held-out cells of the same dataset. Proxy: the use case transfers labels to a new dataset, while this split keeps train and test cells from the same study and batch structure.

5 reviewed evaluations

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

19 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-23-5347695500ed
Property and statement	Original source and location	Review and provenance
Citation locations 1 values source id lit-cells-networks-20261011-chen2026-source-chen2026 locator Table 4; Results on supervised annotation; Methods 'Cell type annotation' Context-only references	Harmonised benchmarking of foundation models for single-cell and spatial transcriptomics reveals context-dependent generalisation Original source ↗ lit-cells-networks-20261011-chen2026-source-chen2026: Table 4; Results on supervised annotation; Methods 'Cell type annotation' Version: arXiv 2607.17227v2, updated 2026-09-17 (v1 posted 2026-07-19) Retrieved: 2026-10-11T21:29:34Z	not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.citation_locators` Source artifact SHA-256: `8137338c6146f570a6546f30707d4244baca9dab848b32c51539665a5ba539da` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison group chen2026-harmonised-fm Context-only references	Harmonised benchmarking of foundation models for single-cell and spatial transcriptomics reveals context-dependent generalisation Original source ↗ lit-cells-networks-20261011-chen2026-source-chen2026: Table 4; Results on supervised annotation; Methods 'Cell type annotation' Version: arXiv 2607.17227v2, updated 2026-09-17 (v1 posted 2026-07-19) Retrieved: 2026-10-11T21:29:34Z	not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.comparison_group` Source artifact SHA-256: `8137338c6146f570a6546f30707d4244baca9dab848b32c51539665a5ba539da` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison title Harmonised single-cell and spatial foundation model benchmark (Chen et al. 2026) Context-only references	Harmonised benchmarking of foundation models for single-cell and spatial transcriptomics reveals context-dependent generalisation Original source ↗ lit-cells-networks-20261011-chen2026-source-chen2026: Table 4; Results on supervised annotation; Methods 'Cell type annotation' Version: arXiv 2607.17227v2, updated 2026-09-17 (v1 posted 2026-07-19) Retrieved: 2026-10-11T21:29:34Z	not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.comparison_title` Source artifact SHA-256: `8137338c6146f570a6546f30707d4244baca9dab848b32c51539665a5ba539da` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Constraints 2 values Inspect every linked evaluation's source locator before citing a result. Prefer macro-F1 and PR-AUC; accuracy and ROC-AUC saturate on ATAA (Results). Context-only references	Harmonised benchmarking of foundation models for single-cell and spatial transcriptomics reveals context-dependent generalisation Original source ↗ lit-cells-networks-20261011-chen2026-source-chen2026: Table 4; Results on supervised annotation; Methods 'Cell type annotation' Version: arXiv 2607.17227v2, updated 2026-09-17 (v1 posted 2026-07-19) Retrieved: 2026-10-11T21:29:34Z	not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.constraints` Source artifact SHA-256: `8137338c6146f570a6546f30707d4244baca9dab848b32c51539665a5ba539da` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Endpoint Accuracy, precision, recall, macro-F1, PR-AUC and ROC-AUC of supervised cell type annotation on a stratified held-out split of ATAA Context-only references	Harmonised benchmarking of foundation models for single-cell and spatial transcriptomics reveals context-dependent generalisation Original source ↗ lit-cells-networks-20261011-chen2026-source-chen2026: Table 4; Results on supervised annotation; Methods 'Cell type annotation' Version: arXiv 2607.17227v2, updated 2026-09-17 (v1 posted 2026-07-19) Retrieved: 2026-10-11T21:29:34Z	not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.endpoint` Source artifact SHA-256: `8137338c6146f570a6546f30707d4244baca9dab848b32c51539665a5ba539da` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Claimed field links:assessed_by:lit-cells-networks-20261011-chen2026-protocol-annotation-ataa Context-only references	Harmonised benchmarking of foundation models for single-cell and spatial transcriptomics reveals context-dependent generalisation Original source ↗ lit-cells-networks-20261011-chen2026-source-chen2026: Table 4; Results on supervised annotation; Methods 'Cell type annotation' Version: arXiv 2607.17227v2, updated 2026-09-17 (v1 posted 2026-07-19) Retrieved: 2026-10-11T21:29:34Z	not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.field` Source artifact SHA-256: `8137338c6146f570a6546f30707d4244baca9dab848b32c51539665a5ba539da` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Headline metric macro-f1 Context-only references	Harmonised benchmarking of foundation models for single-cell and spatial transcriptomics reveals context-dependent generalisation Original source ↗ lit-cells-networks-20261011-chen2026-source-chen2026: Table 4; Results on supervised annotation; Methods 'Cell type annotation' Version: arXiv 2607.17227v2, updated 2026-09-17 (v1 posted 2026-07-19) Retrieved: 2026-10-11T21:29:34Z	not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.headline_metric` Source artifact SHA-256: `8137338c6146f570a6546f30707d4244baca9dab848b32c51539665a5ba539da` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Limitations 6 values Preprint; single run with seed 42 and no spread, so small differences are not testable. The authors did not develop any of the six models (independent comparison), but no conventional baseline is in the tables. Within-dataset stratified split, not cross-dataset transfer. PR-AUC and ROC-AUC are macro-averaged (Methods); precision and recall are called global without a definition and appear to be averaged differently between models (source evidence concern), so do not compare them across models. Reference labels are the datasets' curated marker-gene and expert annotations, not independent ground truth. No rejection of unseen cell types or unassigned output is evaluated. Context-only references	Harmonised benchmarking of foundation models for single-cell and spatial transcriptomics reveals context-dependent generalisation Original source ↗ lit-cells-networks-20261011-chen2026-source-chen2026: Table 4; Results on supervised annotation; Methods 'Cell type annotation' Version: arXiv 2607.17227v2, updated 2026-09-17 (v1 posted 2026-07-19) Retrieved: 2026-10-11T21:29:34Z	not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.limitations` Source artifact SHA-256: `8137338c6146f570a6546f30707d4244baca9dab848b32c51539665a5ba539da` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Pinned records 38 values record id lit-cells-networks-20261011-chen2026-eval-annotation-ataa-cellplm fields status links attributes.origin attributes.comparison sha256 4b34f96ea7e7dfb34ae5634944988ff0b8395ca2095c026ba03bd1ceed4e0d64 record id lit-cells-networks-20261011-chen2026-eval-annotation-ataa-genept-w fields status links attributes.origin attributes.comparison sha256 ea0b2819c2b4c8f99fc4912cefbff5349b245b44f798624fe91cf21348e53a89 record id lit-cells-networks-20261011-chen2026-eval-annotation-ataa-nicheformer fields status links attributes.origin attributes.comparison sha256 ba6046d1c293fece0657af77587e19a797314a9df0873d83e302c5e9a4bd5ee2 record id lit-cells-networks-20261011-chen2026-eval-annotation-ataa-scelmo fields status links attributes.origin attributes.comparison sha256 1b88b2fafd0d7f23e14adc1d266994bff644b780c0104b74b2dfed76e3169ace record id lit-cells-networks-20261011-chen2026-eval-annotation-ataa-scgpt-spatial fields status links attributes.origin attributes.comparison sha256 b723f4bdb2c553f0246d28d7b1b67c8b99cb57deaab8eef673ce93ccb5af4b23 record id lit-cells-networks-20261011-chen2026-protocol-annotation-ataa fields status name description facets source_ids links attributes sha256 a5ea95ecf162cf2f00661b8efd8bc43f3f811d38f8265f632285e94d797f02bd record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-cellplm-accuracy fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 8f0ae506f565a83d0e86e0bc3b97835ccbf71a68bb365dda7aaabaa6cd2d512e record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-cellplm-macro-f1 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 ae1d1d71e474cba34cdb923de9d05048da9be93a13143d5be5c9ebec03cf08cc record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-cellplm-pr-auc fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 9414af44e9c0d0c3c227f122711222b87234eadc68ada3632876deca804c018b record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-cellplm-precision fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 00907c66dca63f81089c38a6874df6068c458542f4d98c615b13980cab2a4316 record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-cellplm-recall fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 ee7c366f05d2396a3b2120bf8d5bd243a78315dcdeb973fcee37c435b33f833d record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-cellplm-roc-auc fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 9b999931a75aafb766fe8efc8145bb499ffdaa2b17fac4206f62df642c37341e record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-genept-w-accuracy fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 f8fdd600a08042fd8158ecda74035929576c04153a1ef4a6dfa6f61ab53bf59a record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-genept-w-macro-f1 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 4e9932f6503ee218730aaefebabc13782a861b784ef585ff389aba26c025cb63 record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-genept-w-pr-auc fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 8cae0a3098d481a7c57dd7f9754db378b1dd15e0f0fc520ed619571769f60d72 record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-genept-w-precision fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 5fed8d144ff87ec3dede63fcd592d76040e62f758bdd14c3d8cb7925480c4028 record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-genept-w-recall fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 5b74e8570673f43c1efa2d12c5f7584f5f90979863f30c6c4f1878140652518d record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-genept-w-roc-auc fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 d9e527dda40f96508e6022f2573624f951f1a4fdcc4eb2578a1e2f82c5e1d49d record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-nicheformer-accuracy fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 8f0ae506f565a83d0e86e0bc3b97835ccbf71a68bb365dda7aaabaa6cd2d512e record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-nicheformer-macro-f1 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 7a358e5833fc3bf3b9bcd857e96502364a8a57af4be898ee921184c8cad6f025 record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-nicheformer-pr-auc fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 9414af44e9c0d0c3c227f122711222b87234eadc68ada3632876deca804c018b record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-nicheformer-precision fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 00907c66dca63f81089c38a6874df6068c458542f4d98c615b13980cab2a4316 record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-nicheformer-recall fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 ee7c366f05d2396a3b2120bf8d5bd243a78315dcdeb973fcee37c435b33f833d record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-nicheformer-roc-auc fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 9b999931a75aafb766fe8efc8145bb499ffdaa2b17fac4206f62df642c37341e record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-scelmo-accuracy fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 6c3efb411e95bddf84278cbb432c6a1430e96e794cbaa839a74f90c4b27bd0c8 record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-scelmo-macro-f1 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 9e761e2f0b2b8ed4a77a36c87cab9f79dd4cab5c72ff4d7b2fe3addf5cbba63f record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-scelmo-pr-auc fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 0c6a4c3361ab780e303f50d8ef52388ca017dd7ef0535668fd8aeaa892c0d18e record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-scelmo-precision fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 e56ec6d36c32dbde0930509842dbfabac96e099c2494f60832b1c83e6d00bf7b record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-scelmo-recall fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 5f40ea2990b91eca7c85eb36ca27cc94fedf094c4859184b576e83fd48c90395 record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-scelmo-roc-auc fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 9b999931a75aafb766fe8efc8145bb499ffdaa2b17fac4206f62df642c37341e record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-scgpt-spatial-accuracy fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 8f0ae506f565a83d0e86e0bc3b97835ccbf71a68bb365dda7aaabaa6cd2d512e record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-scgpt-spatial-macro-f1 fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 7a358e5833fc3bf3b9bcd857e96502364a8a57af4be898ee921184c8cad6f025 record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-scgpt-spatial-pr-auc fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 9414af44e9c0d0c3c227f122711222b87234eadc68ada3632876deca804c018b record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-scgpt-spatial-precision fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 b3129bb9f0be1db2bbdd6c39b8ccc79840c56f38ef2faa4f8e62393e8e51cdb6 record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-scgpt-spatial-recall fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 53ee1dff11e6096fefd865aceb6d413c7c069bed248c990798be7e67f43e24fe record id lit-cells-networks-20261011-chen2026-result-annotation-ataa-scgpt-spatial-roc-auc fields status attributes.metric attributes.metric_qualifier attributes.printed_value attributes.numeric_value sha256 9b999931a75aafb766fe8efc8145bb499ffdaa2b17fac4206f62df642c37341e record id lit-cells-networks-20261011-chen2026-source-chen2026 fields status attributes.artifact_sha256 sha256 0b42f541d5ca376dc4e14f043f2eef02b5f307d7820685e0a1e3ef4a31def2b5 record id use-case-cell-type-annotation-transfer fields status name description facets attributes.question attributes.decision attributes.inputs attributes.output attributes.exclusions attributes.setting attributes.clinical_scope attributes.intended_users sha256 f4ef70c0d86c1d3ea8ff8600431eb0792da0bd5f355e7137bc364a42aa284bd9 Context-only references	Harmonised benchmarking of foundation models for single-cell and spatial transcriptomics reveals context-dependent generalisation Original source ↗ lit-cells-networks-20261011-chen2026-source-chen2026: Table 4; Results on supervised annotation; Methods 'Cell type annotation' Version: arXiv 2607.17227v2, updated 2026-09-17 (v1 posted 2026-07-19) Retrieved: 2026-10-11T21:29:34Z	not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.pins` Source artifact SHA-256: `8137338c6146f570a6546f30707d4244baca9dab848b32c51539665a5ba539da` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Rationale Scores foundation models fine-tuned on reference labels and tested on held-out cells of the same dataset. Proxy: the use case transfers labels to a new dataset, while this split keeps train and test cells from the same study and batch structure. Context-only references	Harmonised benchmarking of foundation models for single-cell and spatial transcriptomics reveals context-dependent generalisation Original source ↗ lit-cells-networks-20261011-chen2026-source-chen2026: Table 4; Results on supervised annotation; Methods 'Cell type annotation' Version: arXiv 2607.17227v2, updated 2026-09-17 (v1 posted 2026-07-19) Retrieved: 2026-10-11T21:29:34Z	not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.rationale` Source artifact SHA-256: `8137338c6146f570a6546f30707d4244baca9dab848b32c51539665a5ba539da` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

How to read the evidence

Sources and history

Release 2026-10-23-5347695500ed · Record review: source checked

1 source record and release history

Harmonised benchmarking of foundation models for single-cell and spatial transcriptomics reveals context-dependent generalisation · Original source · arXiv 2607.17227v2, updated 2026-09-17 (v1 posted 2026-07-19)

Download this release (gzip)

Technical metadata and extraction receipts

Stable ID: use-case-mapping-lit-cells-networks-20261011-chen2026-annotation-ataa

field: links:assessed_by:lit-cells-networks-20261011-chen2026-protocol-annotation-ataa
value: lit-cells-networks-20261011-chen2026-protocol-annotation-ataa
relevance: proxy
endpoint: Accuracy, precision, recall, macro-F1, PR-AUC and ROC-AUC of supervised cell type annotation on a stratified held-out split of ATAA
rationale: Scores foundation models fine-tuned on reference labels and tested on held-out cells of the same dataset. Proxy: the use case transfers labels to a new dataset, while this split keeps train and test cells from the same study and batch structure.
constraints: Inspect every linked evaluation's source locator before citing a result.; Prefer macro-F1 and PR-AUC; accuracy and ROC-AUC saturate on ATAA (Results).
limitations: Preprint; single run with seed 42 and no spread, so small differences are not testable.; The authors did not develop any of the six models (independent comparison), but no conventional baseline is in the tables.; Within-dataset stratified split, not cross-dataset transfer.; PR-AUC and ROC-AUC are macro-averaged (Methods); precision and recall are called global without a definition and appear to be averaged differently between models (source evidence concern), so do not compare them across models.; Reference labels are the datasets' curated marker-gene and expert annotations, not independent ground truth.; No rejection of unseen cell types or unassigned output is evaluated.
citation locators: source id: lit-cells-networks-20261011-chen2026-source-chen2026; locator: Table 4; Results on supervised annotation; Methods 'Cell type annotation'
source locator: lit-cells-networks-20261011-chen2026-source-chen2026: Table 4; Results on supervised annotation; Methods 'Cell type annotation'
headline metric: macro-f1
comparison group: chen2026-harmonised-fm
comparison title: Harmonised single-cell and spatial foundation model benchmark (Chen et al. 2026)
stratum label: ATAA held-out annotation
stratum order: 1
reviewed evaluations: lit-cells-networks-20261011-chen2026-eval-annotation-ataa-cellplm; lit-cells-networks-20261011-chen2026-eval-annotation-ataa-genept-w; lit-cells-networks-20261011-chen2026-eval-annotation-ataa-nicheformer; lit-cells-networks-20261011-chen2026-eval-annotation-ataa-scelmo; lit-cells-networks-20261011-chen2026-eval-annotation-ataa-scgpt-spatial
reason: Add a relevance judgement for a protocol from the 2026-10-11 cells-spatial and networks-mechanistic literature pass, reviewed in docs/reviews/2026-10-12-cells-networks-batches.md.
review: method: ai-assisted-source-review; scope-review; method note: Reviewer checked the endpoint against the use case's inputs, output and exclusions, the relevance rating and the limitations; every evaluation on the protocol had its values checked in the batch review. Corrections listed in review.md were applied by the extractor.; reviewer: claude; reviewer note: Claude review agent reviewer-cn-2, independent of the extractor lit-cells-networks; no human review claimed; reviewed at: 2026-10-12T08:44:00Z; note: Automated review; not human scientific review.
pins: record id: lit-cells-networks-20261011-chen2026-eval-annotation-ataa-cellplm; fields: status; links; attributes.origin; attributes.comparison; sha256: 4b34f96ea7e7dfb34ae5634944988ff0b8395ca2095c026ba03bd1ceed4e0d64; record id: lit-cells-networks-20261011-chen2026-eval-annotation-ataa-genept-w; fields: status; links; attributes.origin; attributes.comparison; sha256: ea0b2819c2b4c8f99fc4912cefbff5349b245b44f798624fe91cf21348e53a89; record id: lit-cells-networks-20261011-chen2026-eval-annotation-ataa-nicheformer; fields: status; links; attributes.origin; attributes.comparison; sha256: ba6046d1c293fece0657af77587e19a797314a9df0873d83e302c5e9a4bd5ee2; record id: lit-cells-networks-20261011-chen2026-eval-annotation-ataa-scelmo; fields: status; links; attributes.origin; attributes.comparison; sha256: 1b88b2fafd0d7f23e14adc1d266994bff644b780c0104b74b2dfed76e3169ace; record id: lit-cells-networks-20261011-chen2026-eval-annotation-ataa-scgpt-spatial; fields: status; links; attributes.origin; attributes.comparison; sha256: b723f4bdb2c553f0246d28d7b1b67c8b99cb57deaab8eef673ce93ccb5af4b23; record id: lit-cells-networks-20261011-chen2026-protocol-annotation-ataa; fields: status; name; description; facets; source_ids; links; attributes; sha256: a5ea95ecf162cf2f00661b8efd8bc43f3f811d38f8265f632285e94d797f02bd; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-cellplm-accuracy; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 8f0ae506f565a83d0e86e0bc3b97835ccbf71a68bb365dda7aaabaa6cd2d512e; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-cellplm-macro-f1; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: ae1d1d71e474cba34cdb923de9d05048da9be93a13143d5be5c9ebec03cf08cc; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-cellplm-pr-auc; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 9414af44e9c0d0c3c227f122711222b87234eadc68ada3632876deca804c018b; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-cellplm-precision; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 00907c66dca63f81089c38a6874df6068c458542f4d98c615b13980cab2a4316; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-cellplm-recall; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: ee7c366f05d2396a3b2120bf8d5bd243a78315dcdeb973fcee37c435b33f833d; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-cellplm-roc-auc; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 9b999931a75aafb766fe8efc8145bb499ffdaa2b17fac4206f62df642c37341e; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-genept-w-accuracy; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: f8fdd600a08042fd8158ecda74035929576c04153a1ef4a6dfa6f61ab53bf59a; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-genept-w-macro-f1; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 4e9932f6503ee218730aaefebabc13782a861b784ef585ff389aba26c025cb63; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-genept-w-pr-auc; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 8cae0a3098d481a7c57dd7f9754db378b1dd15e0f0fc520ed619571769f60d72; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-genept-w-precision; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 5fed8d144ff87ec3dede63fcd592d76040e62f758bdd14c3d8cb7925480c4028; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-genept-w-recall; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 5b74e8570673f43c1efa2d12c5f7584f5f90979863f30c6c4f1878140652518d; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-genept-w-roc-auc; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: d9e527dda40f96508e6022f2573624f951f1a4fdcc4eb2578a1e2f82c5e1d49d; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-nicheformer-accuracy; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 8f0ae506f565a83d0e86e0bc3b97835ccbf71a68bb365dda7aaabaa6cd2d512e; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-nicheformer-macro-f1; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 7a358e5833fc3bf3b9bcd857e96502364a8a57af4be898ee921184c8cad6f025; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-nicheformer-pr-auc; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 9414af44e9c0d0c3c227f122711222b87234eadc68ada3632876deca804c018b; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-nicheformer-precision; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 00907c66dca63f81089c38a6874df6068c458542f4d98c615b13980cab2a4316; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-nicheformer-recall; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: ee7c366f05d2396a3b2120bf8d5bd243a78315dcdeb973fcee37c435b33f833d; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-nicheformer-roc-auc; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 9b999931a75aafb766fe8efc8145bb499ffdaa2b17fac4206f62df642c37341e; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-scelmo-accuracy; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 6c3efb411e95bddf84278cbb432c6a1430e96e794cbaa839a74f90c4b27bd0c8; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-scelmo-macro-f1; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 9e761e2f0b2b8ed4a77a36c87cab9f79dd4cab5c72ff4d7b2fe3addf5cbba63f; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-scelmo-pr-auc; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 0c6a4c3361ab780e303f50d8ef52388ca017dd7ef0535668fd8aeaa892c0d18e; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-scelmo-precision; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: e56ec6d36c32dbde0930509842dbfabac96e099c2494f60832b1c83e6d00bf7b; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-scelmo-recall; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 5f40ea2990b91eca7c85eb36ca27cc94fedf094c4859184b576e83fd48c90395; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-scelmo-roc-auc; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 9b999931a75aafb766fe8efc8145bb499ffdaa2b17fac4206f62df642c37341e; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-scgpt-spatial-accuracy; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 8f0ae506f565a83d0e86e0bc3b97835ccbf71a68bb365dda7aaabaa6cd2d512e; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-scgpt-spatial-macro-f1; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 7a358e5833fc3bf3b9bcd857e96502364a8a57af4be898ee921184c8cad6f025; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-scgpt-spatial-pr-auc; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 9414af44e9c0d0c3c227f122711222b87234eadc68ada3632876deca804c018b; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-scgpt-spatial-precision; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: b3129bb9f0be1db2bbdd6c39b8ccc79840c56f38ef2faa4f8e62393e8e51cdb6; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-scgpt-spatial-recall; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 53ee1dff11e6096fefd865aceb6d413c7c069bed248c990798be7e67f43e24fe; record id: lit-cells-networks-20261011-chen2026-result-annotation-ataa-scgpt-spatial-roc-auc; fields: status; attributes.metric; attributes.metric_qualifier; attributes.printed_value; attributes.numeric_value; sha256: 9b999931a75aafb766fe8efc8145bb499ffdaa2b17fac4206f62df642c37341e; record id: lit-cells-networks-20261011-chen2026-source-chen2026; fields: status; attributes.artifact_sha256; sha256: 0b42f541d5ca376dc4e14f043f2eef02b5f307d7820685e0a1e3ef4a31def2b5; record id: use-case-cell-type-annotation-transfer; fields: status; name; description; facets; attributes.question; attributes.decision; attributes.inputs; attributes.output; attributes.exclusions; attributes.setting; attributes.clinical_scope; attributes.intended_users; sha256: f4ef70c0d86c1d3ea8ff8600431eb0792da0bd5f355e7137bc364a42aa284bd9

Related records

subject: Transfer cell-type annotations to a new dataset

Suggest a correction