Relevance of Pretraining GPUs and runtime for short-range models (HyenaDNA Table A.2) to "Select an execution workflow for large-scale diagnostic genomics"
- Use case
- Select an execution workflow for large-scale diagnostic genomics
- Assessed by
- Pretraining GPUs and runtime for short-range models (HyenaDNA Table A.2)
- Relevance
- outside_scope
- Endpoint
- GPUs, wall-clock time and GPU-hours of pretraining for DNABERT 110M, Nucleotide Transformer 2.5B and HyenaDNA 436K and 1.6M (not shown as evidence)
Outside scope. Pretraining from scratch is spent once by a model's developers and does not measure running a model in a team's workflow. Recorded so these figures are not read as execution cost. The model card's suggested GPUs for inference are kept as a claim (gfm-guide-20261014-claim-hyenadna-suggested-gpus), not a result.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
15 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
Citation locations1 values
| HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 gfm-guide-20261014-source-hyenadna-arxiv-v2: Table A.2 (page 17) Version: arXiv 2306.15794v2 | not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Constraints1 values
| HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 gfm-guide-20261014-source-hyenadna-arxiv-v2: Table A.2 (page 17) Version: arXiv 2306.15794v2 | not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Endpoint GPUs, wall-clock time and GPU-hours of pretraining for DNABERT 110M, Nucleotide Transformer 2.5B and HyenaDNA 436K and 1.6M (not shown as evidence) Context-only references | HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 gfm-guide-20261014-source-hyenadna-arxiv-v2: Table A.2 (page 17) Version: arXiv 2306.15794v2 | not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed field links:assessed_by:gfm-guide-20261014-protocol-hyenadna-pretraining-compute Context-only references | HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 gfm-guide-20261014-source-hyenadna-arxiv-v2: Table A.2 (page 17) Version: arXiv 2306.15794v2 | not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Limitations4 values
| HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 gfm-guide-20261014-source-hyenadna-arxiv-v2: Table A.2 (page 17) Version: arXiv 2306.15794v2 | not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Pinned records3 values
| HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 gfm-guide-20261014-source-hyenadna-arxiv-v2: Table A.2 (page 17) Version: arXiv 2306.15794v2 | not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Rationale Outside scope. Pretraining from scratch is spent once by a model's developers and does not measure running a model in a team's workflow. Recorded so these figures are not read as execution cost. The model card's suggested GPUs for inference are kept as a claim (gfm-guide-20261014-claim-hyenadna-suggested-gpus), not a result. Context-only references | HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 gfm-guide-20261014-source-hyenadna-arxiv-v2: Table A.2 (page 17) Version: arXiv 2306.15794v2 | not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Reason Add relevance judgements for the execution and compute protocols of the genomic foundation model guide sources batch (data/omics/gfm-guide-sources-20261014, issue #162), independently reviewed in PR #169. Context-only references | HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 gfm-guide-20261014-source-hyenadna-arxiv-v2: Table A.2 (page 17) Version: arXiv 2306.15794v2 | not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relevance outside_scope Context-only references | HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 gfm-guide-20261014-source-hyenadna-arxiv-v2: Table A.2 (page 17) Version: arXiv 2306.15794v2 | not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Revision 1 Context-only references | HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 gfm-guide-20261014-source-hyenadna-arxiv-v2: Table A.2 (page 17) Version: arXiv 2306.15794v2 | not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
1 source record and release history
- HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution, arXiv v2 · Original source · arXiv 2306.15794v2
Technical metadata and extraction receipts
Stable ID: use-case-mapping-gfm-guide-20261014-hyenadna-pretraining-compute
- field
- links:assessed_by:gfm-guide-20261014-protocol-hyenadna-pretraining-compute
- value
- gfm-guide-20261014-protocol-hyenadna-pretraining-compute
- relevance
- outside_scope
- endpoint
- GPUs, wall-clock time and GPU-hours of pretraining for DNABERT 110M, Nucleotide Transformer 2.5B and HyenaDNA 436K and 1.6M (not shown as evidence)
- rationale
- Outside scope. Pretraining from scratch is spent once by a model's developers and does not measure running a model in a team's workflow. Recorded so these figures are not read as execution cost. The model card's suggested GPUs for inference are kept as a claim (gfm-guide-20261014-claim-hyenadna-suggested-gpus), not a result.
- constraints
- Do not cite these pretraining figures as the cost of running any of these models in a workflow.
- limitations
- The DNABERT and Nucleotide Transformer GPU-hours are about 2.5 times the GPUs times wall clock printed in the same table (source evidence concern).; The DNABERT and Nucleotide Transformer columns are compiled by the HyenaDNA authors without a cited source.; Mixed GPU types (RTX 2080 Ti, A100 80GB, A100 40GB), and the HyenaDNA models are far smaller and pretrain on different data and sequence lengths.; Preprint (arXiv v2).
- revision
- 1
- reason
- Add relevance judgements for the execution and compute protocols of the genomic foundation model guide sources batch (data/omics/gfm-guide-sources-20261014, issue #162), independently reviewed in PR #169.
- citation locators
- source id: gfm-guide-20261014-source-hyenadna-arxiv-v2; locator: Table A.2 (page 17)
- source locator
- gfm-guide-20261014-source-hyenadna-arxiv-v2: Table A.2 (page 17)
- review
- method: source-hash-verification; independent-cell-check; scope-review; reviewer: claude; reviewer note: Claude (Opus 5.5) review agent review-169, independent of the agent that drafted these judgements for issue #162; no human review claimed; reviewed at: 2026-10-14T19:00:00Z; note: Independent relevance review of an outside-scope judgement: pretraining compute does not measure running a model in a team's workflow. Table A.2 re-read in the pinned arXiv v2 PDF (hash matches); the 2.5-fold GPU-hours discrepancy in the limitations is confirmed. No measured evidence is shown. See docs/reviews/use-cases/diagnostic-genomics-model-execution-judgements-2026-10-14.md.
- pins
- record id: gfm-guide-20261014-protocol-hyenadna-pretraining-compute; fields: status; name; description; facets; source_ids; links; attributes; sha256: 2c3d15f510ddcd6fe719052afebf8fb438bfd6fbba682e5439f7fedf1194a1e1; record id: gfm-guide-20261014-source-hyenadna-arxiv-v2; fields: status; attributes.artifact_sha256; sha256: 6bebd2a77e3d25b4187d8da8524ff0d3938162be25ef131dad9a502a5d7c4b5e; record id: use-case-diagnostic-genomics-model-execution; fields: status; name; description; facets; attributes.question; attributes.decision; attributes.inputs; attributes.output; attributes.exclusions; attributes.setting; attributes.clinical_scope; attributes.intended_users; sha256: 1c2a12431556cc6581f5aab019cf91576d2393387b88a8a2bea35ea2a3ee4a70