rewirebio.iobenchmarks
Evidence claim

baseline: structural-20261009-protocol-smorodina2026-vhh-cognate-vs-shuffled

Descriptive fact transcribed from the pinned source.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

6 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-10-6e93f504adfc
Property and statementOriginal source and locationReview and provenance
attributes.field
baseline
Context-only references
Structural Plausibility Without Binding Specificity: Limits of AI-Based Antibody-Antigen Structure Prediction Confidence Scores

Original source ↗

Results P11

Version: bioRxiv version 1, posted 2026-03-03; Europe PMC preprint full text PPR1221387 (manuscript EMS215481); not peer reviewed
Retrieved: 2026-10-09T21:25:48Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.field

Source artifact SHA-256: 0ad24054d98fd1888fa8bf3120f76e22f7bf6b1965261b16f045986d72c50732

Hash scope: JATS XML parse (xml.etree), by extract/extract_structural.py

Inspected artifact

attributes.source_locator
Results P11
Context-only references
Structural Plausibility Without Binding Specificity: Limits of AI-Based Antibody-Antigen Structure Prediction Confidence Scores

Original source ↗

Results P11

Version: bioRxiv version 1, posted 2026-03-03; Europe PMC preprint full text PPR1221387 (manuscript EMS215481); not peer reviewed
Retrieved: 2026-10-09T21:25:48Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 0ad24054d98fd1888fa8bf3120f76e22f7bf6b1965261b16f045986d72c50732

Hash scope: JATS XML parse (xml.etree), by extract/extract_structural.py

Inspected artifact

attributes.value
Random baseline precision is about 0.011: about 89 to 91 positives out of about 8041 to 8281 evaluated pairs, depending on the tool after excluding missing values.
Context-only references
Structural Plausibility Without Binding Specificity: Limits of AI-Based Antibody-Antigen Structure Prediction Confidence Scores

Original source ↗

Results P11

Version: bioRxiv version 1, posted 2026-03-03; Europe PMC preprint full text PPR1221387 (manuscript EMS215481); not peer reviewed
Retrieved: 2026-10-09T21:25:48Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.value

Source artifact SHA-256: 0ad24054d98fd1888fa8bf3120f76e22f7bf6b1965261b16f045986d72c50732

Hash scope: JATS XML parse (xml.etree), by extract/extract_structural.py

Inspected artifact

description
Descriptive fact transcribed from the pinned source.
Context-only references
Structural Plausibility Without Binding Specificity: Limits of AI-Based Antibody-Antigen Structure Prediction Confidence Scores

Original source ↗

Results P11

Version: bioRxiv version 1, posted 2026-03-03; Europe PMC preprint full text PPR1221387 (manuscript EMS215481); not peer reviewed
Retrieved: 2026-10-09T21:25:48Z

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: 0ad24054d98fd1888fa8bf3120f76e22f7bf6b1965261b16f045986d72c50732

Hash scope: JATS XML parse (xml.etree), by extract/extract_structural.py

Inspected artifact

Relationship: subject
structural-20261009-protocol-smorodina2026-vhh-cognate-vs-shuffled
Context-only references
Structural Plausibility Without Binding Specificity: Limits of AI-Based Antibody-Antigen Structure Prediction Confidence Scores

Original source ↗

Results P11

Version: bioRxiv version 1, posted 2026-03-03; Europe PMC preprint full text PPR1221387 (manuscript EMS215481); not peer reviewed
Retrieved: 2026-10-09T21:25:48Z

not individually reviewed

No individual claim review recorded

Audit details

Field: links:subject:structural-20261009-protocol-smorodina2026-vhh-cognate-vs-shuffled

Source artifact SHA-256: 0ad24054d98fd1888fa8bf3120f76e22f7bf6b1965261b16f045986d72c50732

Hash scope: JATS XML parse (xml.etree), by extract/extract_structural.py

Inspected artifact

name
baseline: structural-20261009-protocol-smorodina2026-vhh-cognate-vs-shuffled
Context-only references
Structural Plausibility Without Binding Specificity: Limits of AI-Based Antibody-Antigen Structure Prediction Confidence Scores

Original source ↗

Results P11

Version: bioRxiv version 1, posted 2026-03-03; Europe PMC preprint full text PPR1221387 (manuscript EMS215481); not peer reviewed
Retrieved: 2026-10-09T21:25:48Z

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: 0ad24054d98fd1888fa8bf3120f76e22f7bf6b1965261b16f045986d72c50732

Hash scope: JATS XML parse (xml.etree), by extract/extract_structural.py

Inspected artifact

Sources and history

Release 2026-10-10-6e93f504adfc · Record review: source checked

1 source records and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: structural-20261009-claim-smorodina2026-random-baseline

field
baseline
value
Random baseline precision is about 0.011: about 89 to 91 positives out of about 8041 to 8281 evaluated pairs, depending on the tool after excluding missing values.
source locator
Results P11
review
method: transcription; reviewer: claude; date: 2026-10-09; reviewer note: Claude (Opus 5.5) extraction agent; extraction record, not an independent review; artifact sha256: 0ad24054d98fd1888fa8bf3120f76e22f7bf6b1965261b16f045986d72c50732; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PPR1221387/fullTextXML; note: Hand transcription from the source text. Pending independent review.
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