training_overlap: NeuSomatic configurations (Wang et al. 2020)
Descriptive fact transcribed from the pinned source.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
12 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.field training_overlap Context-only references | SomaticCombiner: improving the performance of somatic variant calling based on evaluation tests and a consensus approach Methods, Somatic variant calling paragraph 2; Results 'Evaluation of our consensus approach' paragraph 2; Table 1 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Scientific Reports 10:12898, published 2020-07-30; PMC7393490 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.field training_overlap Context-only references | Wang et al. 2020, Supplementary Tables (somatic caller performance) Methods, Somatic variant calling paragraph 2; Results 'Evaluation of our consensus approach' paragraph 2; Table 1 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 41598_2020_69772_MOESM3_ESM.xlsx (Supplementary Tables S1-S9) as served by the publisher | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator Methods, Somatic variant calling paragraph 2; Results 'Evaluation of our consensus approach' paragraph 2; Table 1 Context-only references | SomaticCombiner: improving the performance of somatic variant calling based on evaluation tests and a consensus approach Methods, Somatic variant calling paragraph 2; Results 'Evaluation of our consensus approach' paragraph 2; Table 1 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Scientific Reports 10:12898, published 2020-07-30; PMC7393490 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator Methods, Somatic variant calling paragraph 2; Results 'Evaluation of our consensus approach' paragraph 2; Table 1 Context-only references | Wang et al. 2020, Supplementary Tables (somatic caller performance) Methods, Somatic variant calling paragraph 2; Results 'Evaluation of our consensus approach' paragraph 2; Table 1 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 41598_2020_69772_MOESM3_ESM.xlsx (Supplementary Tables S1-S9) as served by the publisher | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.value NeuSomatic v0.2.1 was run in ensemble mode with the pretrained model NeuSomatic_v0.1.3_ensemble_DREAM3.pth on the WGS datasets, which include DREAM set 3. The authors state that this model was trained by DREAM set 3. Context-only references | SomaticCombiner: improving the performance of somatic variant calling based on evaluation tests and a consensus approach Methods, Somatic variant calling paragraph 2; Results 'Evaluation of our consensus approach' paragraph 2; Table 1 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Scientific Reports 10:12898, published 2020-07-30; PMC7393490 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.value NeuSomatic v0.2.1 was run in ensemble mode with the pretrained model NeuSomatic_v0.1.3_ensemble_DREAM3.pth on the WGS datasets, which include DREAM set 3. The authors state that this model was trained by DREAM set 3. Context-only references | Wang et al. 2020, Supplementary Tables (somatic caller performance) Methods, Somatic variant calling paragraph 2; Results 'Evaluation of our consensus approach' paragraph 2; Table 1 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 41598_2020_69772_MOESM3_ESM.xlsx (Supplementary Tables S1-S9) as served by the publisher | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description Descriptive fact transcribed from the pinned source. Context-only references | SomaticCombiner: improving the performance of somatic variant calling based on evaluation tests and a consensus approach Methods, Somatic variant calling paragraph 2; Results 'Evaluation of our consensus approach' paragraph 2; Table 1 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Scientific Reports 10:12898, published 2020-07-30; PMC7393490 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description Descriptive fact transcribed from the pinned source. Context-only references | Wang et al. 2020, Supplementary Tables (somatic caller performance) Methods, Somatic variant calling paragraph 2; Results 'Evaluation of our consensus approach' paragraph 2; Table 1 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 41598_2020_69772_MOESM3_ESM.xlsx (Supplementary Tables S1-S9) as served by the publisher | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: subject somatic-20261009-config-wang2020-neusomatic-pass Context-only references | SomaticCombiner: improving the performance of somatic variant calling based on evaluation tests and a consensus approach Methods, Somatic variant calling paragraph 2; Results 'Evaluation of our consensus approach' paragraph 2; Table 1 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Scientific Reports 10:12898, published 2020-07-30; PMC7393490 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: subject somatic-20261009-config-wang2020-neusomatic-pass Context-only references | Wang et al. 2020, Supplementary Tables (somatic caller performance) Methods, Somatic variant calling paragraph 2; Results 'Evaluation of our consensus approach' paragraph 2; Table 1 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 41598_2020_69772_MOESM3_ESM.xlsx (Supplementary Tables S1-S9) as served by the publisher | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-10-09-ba02f2f4a36e · Record review: source checked
2 source records and release history
- SomaticCombiner: improving the performance of somatic variant calling based on evaluation tests and a consensus approach · Original source · Scientific Reports 10:12898, published 2020-07-30; PMC7393490 full-text XML
- Wang et al. 2020, Supplementary Tables (somatic caller performance) · Original source · 41598_2020_69772_MOESM3_ESM.xlsx (Supplementary Tables S1-S9) as served by the publisher
Technical metadata and extraction receipts
Stable ID: somatic-20261009-claim-wang2020-neusomatic-dream3-model
- field
- training_overlap
- value
- NeuSomatic v0.2.1 was run in ensemble mode with the pretrained model NeuSomatic_v0.1.3_ensemble_DREAM3.pth on the WGS datasets, which include DREAM set 3. The authors state that this model was trained by DREAM set 3.
- source locator
- Methods, Somatic variant calling paragraph 2; Results 'Evaluation of our consensus approach' paragraph 2; Table 1
- review
- method: source-hash-verification; ai-assisted-source-review; reviewer: claude; reviewer note: Separate Claude review agent, independent of the extractor; no human review claimed; date: 2026-10-09; method note: Re-downloaded the article XML, matched its SHA-256 and read the Methods and Results paragraphs with the reviewer's own JATS text extractor.; artifact sha256: 5f4e6b16675a3a6587f7999792ef479a059851ea8f7a31b4a954901aced5a8b1; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC7393490/fullTextXML; note: Hand transcription from the article XML text. Pending independent review. Independent review 2026-10-09: added the authors' statement that the model was trained by DREAM set 3 (Results 'Evaluation of our consensus approach' paragraph 2), which confirms the overlap the extractor suspected.