method_description: rna-fusion-20261009-method-ericscript
Method description of EricScript
BWA [ 26 ] is used to align reads to the genome. Discordant reads are used to identify candidate gene fusions. BLAT [ 27 ] is then used in an iterative local alignment step to define precise fusion breakpoints by aligning to customized targets of fused exons. An AdaBoost classifier trained with synthetic data is used to score and rank fusion predictions.
Descriptive fact transcribed from the pinned source.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
6 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Claimed field method_description Context-only references | Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods Table 1, row 'EricScript', column 'Brief overview of methodology' Version: Genome Biology 20:213, published 2019-10-21; PMC6802306 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Table 1, row 'EricScript', column 'Brief overview of methodology' Context-only references | Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods Table 1, row 'EricScript', column 'Brief overview of methodology' Version: Genome Biology 20:213, published 2019-10-21; PMC6802306 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed value BWA [ 26 ] is used to align reads to the genome. Discordant reads are used to identify candidate gene fusions. BLAT [ 27 ] is then used in an iterative local alignment step to define precise fusion breakpoints by aligning to customized targets of fused exons. An AdaBoost classifier trained with synthetic data is used to score and rank fusion predictions. Context-only references | Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods Table 1, row 'EricScript', column 'Brief overview of methodology' Version: Genome Biology 20:213, published 2019-10-21; PMC6802306 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Descriptive fact transcribed from the pinned source. Context-only references | Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods Table 1, row 'EricScript', column 'Brief overview of methodology' Version: Genome Biology 20:213, published 2019-10-21; PMC6802306 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: subject rna-fusion-20261009-method-ericscript Context-only references | Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods Table 1, row 'EricScript', column 'Brief overview of methodology' Version: Genome Biology 20:213, published 2019-10-21; PMC6802306 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Name method_description: rna-fusion-20261009-method-ericscript Context-only references | Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods Table 1, row 'EricScript', column 'Brief overview of methodology' Version: Genome Biology 20:213, published 2019-10-21; PMC6802306 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
1 source record and release history
- Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods · Original source · Genome Biology 20:213, published 2019-10-21; PMC6802306 full-text XML
Technical metadata and extraction receipts
Stable ID: rna-fusion-20261012-haas2019-claim-ericscript-classifier
- field
- method_description
- value
- BWA [ 26 ] is used to align reads to the genome. Discordant reads are used to identify candidate gene fusions. BLAT [ 27 ] is then used in an iterative local alignment step to define precise fusion breakpoints by aligning to customized targets of fused exons. An AdaBoost classifier trained with synthetic data is used to score and rank fusion predictions.
- source locator
- Table 1, row 'EricScript', column 'Brief overview of methodology'
- review
- method: source-hash-verification; independent-cell-check; reviewer: claude; reviewer note: Separate Claude review agent (rev-mlvb), independent of the extracting agent; no human review claimed; date: 2026-10-12; artifact sha256: 9828428800fb119b30742d6f6f0b1aabf4b8cd34bd889768c462ca440cd65108; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC6802306/fullTextXML; method note: Transcribed from the pinned article XML; extract/extract_haas2019.py asserts each Table 1 row or sentence.; note: Re-downloaded the Europe PMC full-text XML and matched its SHA-256; compared the text verbatim with a separate parser of Table 1 and the Discussion written for this review.
Related records
- subject: EricScript