adaptation_conflict: regulatory-variant-20261009-config-manzo2025-enformer
Descriptive fact transcribed from the pinned source, added in independent review.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
6 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.field adaptation_conflict Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 2; Section 4.2 paragraphs 2 and 4 Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator Table 2; Section 4.2 paragraphs 2 and 4 Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 2; Section 4.2 paragraphs 2 and 4 Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.value Table 2 says Enformer input was truncated to 1 kb and Borzoi was applied directly on 1 kb input, and that HyenaDNA was inference-only; Section 4.2 says Enformer and Borzoi kept their full input size with the 1 kb sequence inserted into genomic contexts, and lists HyenaDNA among fine-tuned models. Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 2; Section 4.2 paragraphs 2 and 4 Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description Descriptive fact transcribed from the pinned source, added in independent review. Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 2; Section 4.2 paragraphs 2 and 4 Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: subject regulatory-variant-20261009-config-manzo2025-enformer Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 2; Section 4.2 paragraphs 2 and 4 Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| name adaptation_conflict: regulatory-variant-20261009-config-manzo2025-enformer Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 2; Section 4.2 paragraphs 2 and 4 Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-10-10-6e93f504adfc · Record review: source checked
1 source records and release history
- Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants · Original source · Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML
Technical metadata and extraction receipts
Stable ID: regulatory-variant-20261009-claim-manzo2025-adaptation-conflict
- field
- adaptation_conflict
- value
- Table 2 says Enformer input was truncated to 1 kb and Borzoi was applied directly on 1 kb input, and that HyenaDNA was inference-only; Section 4.2 says Enformer and Borzoi kept their full input size with the 1 kb sequence inserted into genomic contexts, and lists HyenaDNA among fine-tuned models.
- source locator
- Table 2; Section 4.2 paragraphs 2 and 4
- review
- method: source-hash-verification; ai-assisted-source-review; method note: Re-downloaded the article XML, matched its SHA-256 and read the author list, references and cited text with the reviewer's own parser.; reviewer: claude; reviewer note: Separate Claude review agent, independent of the extractor; no human review claimed; date: 2026-10-09; artifact sha256: c49e7cef821d7c1a7966db9922b58c2f51d852df13f5cdc3969bf54818e5ed9e; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12562713/fullTextXML; note: Added by the independent reviewer; the Enformer and Borzoi evaluations are excluded from the Manzo judgements because of this conflict.
Related records
- subject: Enformer (Manzo et al. 2025)