DeepAffinity (unified RNN/RNN-CNN; DSSP-derived SPS): family DeepAffinity
ATOM3D retrained the unified RNN/RNN-CNN DeepAffinity model with DSSP-derived SPS input. Family attribution only: the retrained weights and their LBA scores stay with this configuration.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
12 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.field links:family:identity-model-deepaffinity Context-only references | ATOM3D: Tasks On Molecules in Three Dimensions ATOM3D §5.1, p.7; App. F.5, p.24. DeepAffinity arXiv:1806.07537v2 §2.4, p.4. Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.field links:family:identity-model-deepaffinity Context-only references | DeepAffinity: interpretable deep learning of compound–protein affinity (arXiv:1806.07537v2) ATOM3D §5.1, p.7; App. F.5, p.24. DeepAffinity arXiv:1806.07537v2 §2.4, p.4. Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 1806.07537v2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the retrieved original artifact bytes |
| attributes.source_locator ATOM3D §5.1, p.7; App. F.5, p.24. DeepAffinity arXiv:1806.07537v2 §2.4, p.4. Context-only references | ATOM3D: Tasks On Molecules in Three Dimensions ATOM3D §5.1, p.7; App. F.5, p.24. DeepAffinity arXiv:1806.07537v2 §2.4, p.4. Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator ATOM3D §5.1, p.7; App. F.5, p.24. DeepAffinity arXiv:1806.07537v2 §2.4, p.4. Context-only references | DeepAffinity: interpretable deep learning of compound–protein affinity (arXiv:1806.07537v2) ATOM3D §5.1, p.7; App. F.5, p.24. DeepAffinity arXiv:1806.07537v2 §2.4, p.4. Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 1806.07537v2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the retrieved original artifact bytes |
| attributes.target_id identity-model-deepaffinity Context-only references | ATOM3D: Tasks On Molecules in Three Dimensions ATOM3D §5.1, p.7; App. F.5, p.24. DeepAffinity arXiv:1806.07537v2 §2.4, p.4. Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.target_id identity-model-deepaffinity Context-only references | DeepAffinity: interpretable deep learning of compound–protein affinity (arXiv:1806.07537v2) ATOM3D §5.1, p.7; App. F.5, p.24. DeepAffinity arXiv:1806.07537v2 §2.4, p.4. Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 1806.07537v2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the retrieved original artifact bytes |
| description ATOM3D retrained the unified RNN/RNN-CNN DeepAffinity model with DSSP-derived SPS input. Family attribution only: the retrained weights and their LBA scores stay with this configuration. Context-only references | ATOM3D: Tasks On Molecules in Three Dimensions ATOM3D §5.1, p.7; App. F.5, p.24. DeepAffinity arXiv:1806.07537v2 §2.4, p.4. Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description ATOM3D retrained the unified RNN/RNN-CNN DeepAffinity model with DSSP-derived SPS input. Family attribution only: the retrained weights and their LBA scores stay with this configuration. Context-only references | DeepAffinity: interpretable deep learning of compound–protein affinity (arXiv:1806.07537v2) ATOM3D §5.1, p.7; App. F.5, p.24. DeepAffinity arXiv:1806.07537v2 §2.4, p.4. Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 1806.07537v2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the retrieved original artifact bytes |
| Relationship: subject atom3d-method-karimi-et-al-2019 Context-only references | ATOM3D: Tasks On Molecules in Three Dimensions ATOM3D §5.1, p.7; App. F.5, p.24. DeepAffinity arXiv:1806.07537v2 §2.4, p.4. Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: subject atom3d-method-karimi-et-al-2019 Context-only references | DeepAffinity: interpretable deep learning of compound–protein affinity (arXiv:1806.07537v2) ATOM3D §5.1, p.7; App. F.5, p.24. DeepAffinity arXiv:1806.07537v2 §2.4, p.4. Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 1806.07537v2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of the retrieved original artifact bytes |
Sources and history
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: source checked
2 source records and release history
- ATOM3D: Tasks On Molecules in Three Dimensions · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
- DeepAffinity: interpretable deep learning of compound–protein affinity (arXiv:1806.07537v2) · Original source · 1806.07537v2
Technical metadata and extraction receipts
Stable ID: model-evaluation-identity-f7f525c3a659cd81f240
- areas
- molecular-interactions
- field
- links:family:identity-model-deepaffinity
- target id
- identity-model-deepaffinity
- source locator
- ATOM3D §5.1, p.7; App. F.5, p.24. DeepAffinity arXiv:1806.07537v2 §2.4, p.4.
- review
- method: automated_source_review; date: 2026-09-24; note: Source review establishes this relationship only. Exact evaluated configurations and original numerical review status remain unchanged. ATOM3D retrained the unified RNN/RNN-CNN DeepAffinity model with DSSP-derived SPS input. Family attribution only: the retrained weights and their LBA scores stay with this configuration.