rewire.itbenchmarks
Evidence claim

Nucleotide Transformers V2: family Nucleotide Transformer

Only family identity is shared. Preserve size, v1/v2, corpus and adaptation distinctions; generic NT summary selects a best-overall family variant, without supplying checkpoint identity.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

12 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
attributes.field
links:family:discovery-model-nucleotide-transformer
Context-only references
instadeepai/nucleotide-transformer: docs/nucleotide_transformer.md

Original source ↗

mRNABench Table 2/Appendix model inventory; GenomeOcean Table 2; respective model methods; NABench model inventory; GENEB Table 8; source-labelled configuration Nucleotide Transformers V2 | Existing reviewed locator: Table 2:, row Nucleotide Transformers V2, column Precision; XML row3 column2

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: 2dc37b86e16a6970fbc731751f7719d9f676f7f9
Retrieved: 2026-09-16T19:46:19.364532+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.field

Source artifact SHA-256: ab16d582de98652526b5cebb120eec969328f9db29dc741826bcd81c397e0672

Hash scope: SHA-256 of retrieved original artifact bytes

Format: original_artifact

Inspected artifact

attributes.field
links:family:discovery-model-nucleotide-transformer
Context-only references
GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies

Original source ↗

mRNABench Table 2/Appendix model inventory; GenomeOcean Table 2; respective model methods; NABench model inventory; GENEB Table 8; source-labelled configuration Nucleotide Transformers V2 | Existing reviewed locator: Table 2:, row Nucleotide Transformers V2, column Precision; XML row3 column2

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: preprint archived 2025-02-05
Retrieved: 2026-09-17T07:56:18.823068+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.field

Source artifact SHA-256: 3cc0df52522fccda23e3958f069c916b87ee50bb5c9a992fa37e25256546e145

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.source_locator
mRNABench Table 2/Appendix model inventory; GenomeOcean Table 2; respective model methods; NABench model inventory; GENEB Table 8; source-labelled configuration Nucleotide Transformers V2 | Existing reviewed locator: Table 2:, row Nucleotide Transformers V2, column Precision; XML row3 column2
Context-only references
instadeepai/nucleotide-transformer: docs/nucleotide_transformer.md

Original source ↗

mRNABench Table 2/Appendix model inventory; GenomeOcean Table 2; respective model methods; NABench model inventory; GENEB Table 8; source-labelled configuration Nucleotide Transformers V2 | Existing reviewed locator: Table 2:, row Nucleotide Transformers V2, column Precision; XML row3 column2

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: 2dc37b86e16a6970fbc731751f7719d9f676f7f9
Retrieved: 2026-09-16T19:46:19.364532+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.source_locator

Source artifact SHA-256: ab16d582de98652526b5cebb120eec969328f9db29dc741826bcd81c397e0672

Hash scope: SHA-256 of retrieved original artifact bytes

Format: original_artifact

Inspected artifact

attributes.source_locator
mRNABench Table 2/Appendix model inventory; GenomeOcean Table 2; respective model methods; NABench model inventory; GENEB Table 8; source-labelled configuration Nucleotide Transformers V2 | Existing reviewed locator: Table 2:, row Nucleotide Transformers V2, column Precision; XML row3 column2
Context-only references
GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies

Original source ↗

mRNABench Table 2/Appendix model inventory; GenomeOcean Table 2; respective model methods; NABench model inventory; GENEB Table 8; source-labelled configuration Nucleotide Transformers V2 | Existing reviewed locator: Table 2:, row Nucleotide Transformers V2, column Precision; XML row3 column2

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: preprint archived 2025-02-05
Retrieved: 2026-09-17T07:56:18.823068+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 3cc0df52522fccda23e3958f069c916b87ee50bb5c9a992fa37e25256546e145

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.target_id
discovery-model-nucleotide-transformer
Context-only references
instadeepai/nucleotide-transformer: docs/nucleotide_transformer.md

Original source ↗

mRNABench Table 2/Appendix model inventory; GenomeOcean Table 2; respective model methods; NABench model inventory; GENEB Table 8; source-labelled configuration Nucleotide Transformers V2 | Existing reviewed locator: Table 2:, row Nucleotide Transformers V2, column Precision; XML row3 column2

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: 2dc37b86e16a6970fbc731751f7719d9f676f7f9
Retrieved: 2026-09-16T19:46:19.364532+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.target_id

Source artifact SHA-256: ab16d582de98652526b5cebb120eec969328f9db29dc741826bcd81c397e0672

Hash scope: SHA-256 of retrieved original artifact bytes

Format: original_artifact

Inspected artifact

attributes.target_id
discovery-model-nucleotide-transformer
Context-only references
GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies

Original source ↗

mRNABench Table 2/Appendix model inventory; GenomeOcean Table 2; respective model methods; NABench model inventory; GENEB Table 8; source-labelled configuration Nucleotide Transformers V2 | Existing reviewed locator: Table 2:, row Nucleotide Transformers V2, column Precision; XML row3 column2

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: preprint archived 2025-02-05
Retrieved: 2026-09-17T07:56:18.823068+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.target_id

Source artifact SHA-256: 3cc0df52522fccda23e3958f069c916b87ee50bb5c9a992fa37e25256546e145

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

description
Only family identity is shared. Preserve size, v1/v2, corpus and adaptation distinctions; generic NT summary selects a best-overall family variant, without supplying checkpoint identity.
Context-only references
instadeepai/nucleotide-transformer: docs/nucleotide_transformer.md

Original source ↗

mRNABench Table 2/Appendix model inventory; GenomeOcean Table 2; respective model methods; NABench model inventory; GENEB Table 8; source-labelled configuration Nucleotide Transformers V2 | Existing reviewed locator: Table 2:, row Nucleotide Transformers V2, column Precision; XML row3 column2

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: 2dc37b86e16a6970fbc731751f7719d9f676f7f9
Retrieved: 2026-09-16T19:46:19.364532+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: ab16d582de98652526b5cebb120eec969328f9db29dc741826bcd81c397e0672

Hash scope: SHA-256 of retrieved original artifact bytes

Format: original_artifact

Inspected artifact

description
Only family identity is shared. Preserve size, v1/v2, corpus and adaptation distinctions; generic NT summary selects a best-overall family variant, without supplying checkpoint identity.
Context-only references
GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies

Original source ↗

mRNABench Table 2/Appendix model inventory; GenomeOcean Table 2; respective model methods; NABench model inventory; GENEB Table 8; source-labelled configuration Nucleotide Transformers V2 | Existing reviewed locator: Table 2:, row Nucleotide Transformers V2, column Precision; XML row3 column2

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: preprint archived 2025-02-05
Retrieved: 2026-09-17T07:56:18.823068+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: 3cc0df52522fccda23e3958f069c916b87ee50bb5c9a992fa37e25256546e145

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Relationship: subject
paper-model-1ed48b3f09b2cf8027
Context-only references
instadeepai/nucleotide-transformer: docs/nucleotide_transformer.md

Original source ↗

mRNABench Table 2/Appendix model inventory; GenomeOcean Table 2; respective model methods; NABench model inventory; GENEB Table 8; source-labelled configuration Nucleotide Transformers V2 | Existing reviewed locator: Table 2:, row Nucleotide Transformers V2, column Precision; XML row3 column2

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: 2dc37b86e16a6970fbc731751f7719d9f676f7f9
Retrieved: 2026-09-16T19:46:19.364532+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: links:subject:paper-model-1ed48b3f09b2cf8027

Source artifact SHA-256: ab16d582de98652526b5cebb120eec969328f9db29dc741826bcd81c397e0672

Hash scope: SHA-256 of retrieved original artifact bytes

Format: original_artifact

Inspected artifact

Relationship: subject
paper-model-1ed48b3f09b2cf8027
Context-only references
GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies

Original source ↗

mRNABench Table 2/Appendix model inventory; GenomeOcean Table 2; respective model methods; NABench model inventory; GENEB Table 8; source-labelled configuration Nucleotide Transformers V2 | Existing reviewed locator: Table 2:, row Nucleotide Transformers V2, column Precision; XML row3 column2

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: preprint archived 2025-02-05
Retrieved: 2026-09-17T07:56:18.823068+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: links:subject:paper-model-1ed48b3f09b2cf8027

Source artifact SHA-256: 3cc0df52522fccda23e3958f069c916b87ee50bb5c9a992fa37e25256546e145

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Sources and history

View linked audit checks and correction history

Release 2026-09-29-06401fd5b220 · Record review: source checked

2 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: model-evaluation-identity-9bef614903759de558c6

areas
microbes-communities
tasks
Natural vs artificial microbial genome sequence
field
links:family:discovery-model-nucleotide-transformer
target id
discovery-model-nucleotide-transformer
source locator
mRNABench Table 2/Appendix model inventory; GenomeOcean Table 2; respective model methods; NABench model inventory; GENEB Table 8; source-labelled configuration Nucleotide Transformers V2 | Existing reviewed locator: Table 2:, row Nucleotide Transformers V2, column Precision; XML row3 column2
review
method: automated_source_review; date: 2026-09-23; note: Source review establishes this relationship only. Exact evaluated configurations and original numerical review status remain unchanged. Only family identity is shared. Preserve size, v1/v2, corpus and adaptation distinctions; generic NT summary selects a best-overall family variant, without supplying checkpoint identity.
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