Evidence claim

DNABERT-2: description

Description of DNABERT-2

DNABERT-2 learns DNA representations that can be adapted to genomic prediction tasks.

Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

42 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Claimed field description Context-only references	DNABERT-2 official resource Original source ↗ Reviewed profile summary (2026-09-23): evidence-official-7267eabca7c4a7945878, evidence-official-2cf0a41fec83ee9c5cc9, evidence-official-96b5c3a31a50f7c259d6, evidence-official-a48ae27aa000bdab7442, evidence-official-3aa749d3205c0a768b22: DNABERT-2 paper Sections 3.2, 4.1 and 5.2 (Further Pre-Training); official model card and implementation README; official DNABERT-2-117M checkpoint LICENSE at revision 7bce263b15377fc15361f52cfab88f8b586abda0 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Not recorded Retrieved: 2026-09-16T10:50:02Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record
Claimed field description Context-only references	zhihan1996/DNABERT-2-117M: config.json Original source ↗ Reviewed profile summary (2026-09-23): evidence-official-7267eabca7c4a7945878, evidence-official-2cf0a41fec83ee9c5cc9, evidence-official-96b5c3a31a50f7c259d6, evidence-official-a48ae27aa000bdab7442, evidence-official-3aa749d3205c0a768b22: DNABERT-2 paper Sections 3.2, 4.1 and 5.2 (Further Pre-Training); official model card and implementation README; official DNABERT-2-117M checkpoint LICENSE at revision 7bce263b15377fc15361f52cfab88f8b586abda0 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 7bce263b15377fc15361f52cfab88f8b586abda0 Retrieved: 2026-09-16T19:46:20.874956+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `ba9bdafaff0cc3e30556927474d4a179519a9864012bed2628e9f1bc23c84bfd` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	dnabert2: Primary paper PDF Original source ↗ Reviewed profile summary (2026-09-23): evidence-official-7267eabca7c4a7945878, evidence-official-2cf0a41fec83ee9c5cc9, evidence-official-96b5c3a31a50f7c259d6, evidence-official-a48ae27aa000bdab7442, evidence-official-3aa749d3205c0a768b22: DNABERT-2 paper Sections 3.2, 4.1 and 5.2 (Further Pre-Training); official model card and implementation README; official DNABERT-2-117M checkpoint LICENSE at revision 7bce263b15377fc15361f52cfab88f8b586abda0 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2306.15006v2 Retrieved: 2026-09-16T20:04:04.777189+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `49300acee3e4afd44bebc3de9893c3bc310d331bd4805374e0952fdfbf366f06` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	zhihan1996/DNABERT-2-117M: README.md Original source ↗ Reviewed profile summary (2026-09-23): evidence-official-7267eabca7c4a7945878, evidence-official-2cf0a41fec83ee9c5cc9, evidence-official-96b5c3a31a50f7c259d6, evidence-official-a48ae27aa000bdab7442, evidence-official-3aa749d3205c0a768b22: DNABERT-2 paper Sections 3.2, 4.1 and 5.2 (Further Pre-Training); official model card and implementation README; official DNABERT-2-117M checkpoint LICENSE at revision 7bce263b15377fc15361f52cfab88f8b586abda0 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 7bce263b15377fc15361f52cfab88f8b586abda0 Retrieved: 2026-09-16T19:46:20.874956+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `48b18abd051eb4952e0c0a50a0740387a1cea145be06517b67ab73a29431a3bc` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	MAGICS-LAB/DNABERT_2: README.md Original source ↗ Reviewed profile summary (2026-09-23): evidence-official-7267eabca7c4a7945878, evidence-official-2cf0a41fec83ee9c5cc9, evidence-official-96b5c3a31a50f7c259d6, evidence-official-a48ae27aa000bdab7442, evidence-official-3aa749d3205c0a768b22: DNABERT-2 paper Sections 3.2, 4.1 and 5.2 (Further Pre-Training); official model card and implementation README; official DNABERT-2-117M checkpoint LICENSE at revision 7bce263b15377fc15361f52cfab88f8b586abda0 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: f25bed9ee20db966dff39e5c1571249d04e36404 Retrieved: 2026-09-16T19:46:17.892989+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `734a8cec5f667d74d421bf3b273ad7e256216109636da45aa7ceba21cd34de16` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	zhihan1996/DNABERT-2-117M: LICENSE Original source ↗ Reviewed profile summary (2026-09-23): evidence-official-7267eabca7c4a7945878, evidence-official-2cf0a41fec83ee9c5cc9, evidence-official-96b5c3a31a50f7c259d6, evidence-official-a48ae27aa000bdab7442, evidence-official-3aa749d3205c0a768b22: DNABERT-2 paper Sections 3.2, 4.1 and 5.2 (Further Pre-Training); official model card and implementation README; official DNABERT-2-117M checkpoint LICENSE at revision 7bce263b15377fc15361f52cfab88f8b586abda0 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 7bce263b15377fc15361f52cfab88f8b586abda0 Retrieved: 2026-09-16T19:46:20.874956+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	DNABERT-2 official resource Original source ↗ Reviewed profile summary (2026-09-23): evidence-official-7267eabca7c4a7945878, evidence-official-2cf0a41fec83ee9c5cc9, evidence-official-96b5c3a31a50f7c259d6, evidence-official-a48ae27aa000bdab7442, evidence-official-3aa749d3205c0a768b22: DNABERT-2 paper Sections 3.2, 4.1 and 5.2 (Further Pre-Training); official model card and implementation README; official DNABERT-2-117M checkpoint LICENSE at revision 7bce263b15377fc15361f52cfab88f8b586abda0 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Not recorded Retrieved: 2026-09-16T10:50:02Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	zhihan1996/DNABERT-2-117M: config.json Original source ↗ Reviewed profile summary (2026-09-23): evidence-official-7267eabca7c4a7945878, evidence-official-2cf0a41fec83ee9c5cc9, evidence-official-96b5c3a31a50f7c259d6, evidence-official-a48ae27aa000bdab7442, evidence-official-3aa749d3205c0a768b22: DNABERT-2 paper Sections 3.2, 4.1 and 5.2 (Further Pre-Training); official model card and implementation README; official DNABERT-2-117M checkpoint LICENSE at revision 7bce263b15377fc15361f52cfab88f8b586abda0 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 7bce263b15377fc15361f52cfab88f8b586abda0 Retrieved: 2026-09-16T19:46:20.874956+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `ba9bdafaff0cc3e30556927474d4a179519a9864012bed2628e9f1bc23c84bfd` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	dnabert2: Primary paper PDF Original source ↗ Reviewed profile summary (2026-09-23): evidence-official-7267eabca7c4a7945878, evidence-official-2cf0a41fec83ee9c5cc9, evidence-official-96b5c3a31a50f7c259d6, evidence-official-a48ae27aa000bdab7442, evidence-official-3aa749d3205c0a768b22: DNABERT-2 paper Sections 3.2, 4.1 and 5.2 (Further Pre-Training); official model card and implementation README; official DNABERT-2-117M checkpoint LICENSE at revision 7bce263b15377fc15361f52cfab88f8b586abda0 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2306.15006v2 Retrieved: 2026-09-16T20:04:04.777189+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `49300acee3e4afd44bebc3de9893c3bc310d331bd4805374e0952fdfbf366f06` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	zhihan1996/DNABERT-2-117M: README.md Original source ↗ Reviewed profile summary (2026-09-23): evidence-official-7267eabca7c4a7945878, evidence-official-2cf0a41fec83ee9c5cc9, evidence-official-96b5c3a31a50f7c259d6, evidence-official-a48ae27aa000bdab7442, evidence-official-3aa749d3205c0a768b22: DNABERT-2 paper Sections 3.2, 4.1 and 5.2 (Further Pre-Training); official model card and implementation README; official DNABERT-2-117M checkpoint LICENSE at revision 7bce263b15377fc15361f52cfab88f8b586abda0 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 7bce263b15377fc15361f52cfab88f8b586abda0 Retrieved: 2026-09-16T19:46:20.874956+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `48b18abd051eb4952e0c0a50a0740387a1cea145be06517b67ab73a29431a3bc` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact

How to read the evidence

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

6 source records and release history

DNABERT-2 official resource · Original source · Not reported
zhihan1996/DNABERT-2-117M: README.md · Original source · 7bce263b15377fc15361f52cfab88f8b586abda0
zhihan1996/DNABERT-2-117M: config.json · Original source · 7bce263b15377fc15361f52cfab88f8b586abda0
MAGICS-LAB/DNABERT_2: README.md · Original source · f25bed9ee20db966dff39e5c1571249d04e36404
zhihan1996/DNABERT-2-117M: LICENSE · Original source · 7bce263b15377fc15361f52cfab88f8b586abda0
dnabert2: Primary paper PDF · Original source · 2306.15006v2

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Technical metadata and extraction receipts

Stable ID: metadata-correction-e077bb88dc00e0a4bdfa

areas: dna-genomes
method types: foundation_model
field: description
previous value: Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review.
value: DNABERT-2 learns DNA representations that can be adapted to genomic prediction tasks.
source locator: Reviewed profile summary (2026-09-23): evidence-official-7267eabca7c4a7945878, evidence-official-2cf0a41fec83ee9c5cc9, evidence-official-96b5c3a31a50f7c259d6, evidence-official-a48ae27aa000bdab7442, evidence-official-3aa749d3205c0a768b22: DNABERT-2 paper Sections 3.2, 4.1 and 5.2 (Further Pre-Training); official model card and implementation README; official DNABERT-2-117M checkpoint LICENSE at revision 7bce263b15377fc15361f52cfab88f8b586abda0
review: method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked the new sources' licences against the arXiv abstract pages and Europe PMC, the 7 scFoundation pipeline descriptions against their abstracts, the language-model descriptions against their model cards and reports, and the TAPE architecture figures against the TAPE paper; all correct. The catalogue entries reuse reviewed profile summaries.; receipt: data/omics/qa-descriptions-20261011-b/review.json

Related records

subject: DNABERT-2

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