rewirebio.iobenchmarks
Evidence claim

ESM-2: description

Description of ESM-2

ESM-2 is a family of protein sequence encoders that produce representations for downstream protein analyses.

Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

28 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-23-5347695500ed
Property and statementOriginal source and locationReview and provenance
Claimed field
description
Context-only references
ESM-2 official resource

Original source ↗

Reviewed profile summary (2026-09-23): evidence-official-29d4b229a3aa426a6dfb, evidence-official-d7e5c63feb0e0e627625, evidence-official-28fc17fbe0c1d99da219: ESM README: Pre-trained Models and Main models; official facebook/esm2_t33_650M_UR50D README licence metadata and config.json

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: Not recorded
Retrieved: 2026-09-16T10:50:02Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.field

Source artifact SHA-256: Not recorded

Hash scope: Hash scope not separately documented; inspect source record

Claimed field
description
Context-only references
facebook/esm2_t33_650M_UR50D: config.json

Original source ↗

Reviewed profile summary (2026-09-23): evidence-official-29d4b229a3aa426a6dfb, evidence-official-d7e5c63feb0e0e627625, evidence-official-28fc17fbe0c1d99da219: ESM README: Pre-trained Models and Main models; official facebook/esm2_t33_650M_UR50D README licence metadata and config.json

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: 08e4846e537177426273712802403f7ba8261b6c
Retrieved: 2026-09-16T20:04:02.230771+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.field

Source artifact SHA-256: 539095c22efc52a09d6147074ba4ca119f76a890df5901213b2b55f7d2f96b2b

Hash scope: SHA-256 of retrieved original artifact bytes

Format: original_artifact

Inspected artifact

Claimed field
description
Context-only references
facebookresearch/esm: README.md

Original source ↗

Reviewed profile summary (2026-09-23): evidence-official-29d4b229a3aa426a6dfb, evidence-official-d7e5c63feb0e0e627625, evidence-official-28fc17fbe0c1d99da219: ESM README: Pre-trained Models and Main models; official facebook/esm2_t33_650M_UR50D README licence metadata and config.json

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: 2b369911bb5b4b0dda914521b9475cad1656b2ac
Retrieved: 2026-09-16T19:46:19.090082+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.field

Source artifact SHA-256: 8b273c21a322fc9473d1b68d0dd40c8166ab2f89e4a190aa26ca87251b97cba9

Hash scope: SHA-256 of retrieved original artifact bytes

Format: original_artifact

Inspected artifact

Claimed field
description
Context-only references
facebook/esm2_t33_650M_UR50D: README.md

Original source ↗

Reviewed profile summary (2026-09-23): evidence-official-29d4b229a3aa426a6dfb, evidence-official-d7e5c63feb0e0e627625, evidence-official-28fc17fbe0c1d99da219: ESM README: Pre-trained Models and Main models; official facebook/esm2_t33_650M_UR50D README licence metadata and config.json

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: 08e4846e537177426273712802403f7ba8261b6c
Retrieved: 2026-09-16T20:04:02.230771+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.field

Source artifact SHA-256: 462a2f24724e19c6be0efab926315c294a863c9a9770e2c8b3d859b2d81a07de

Hash scope: SHA-256 of retrieved original artifact bytes

Format: original_artifact

Inspected artifact

Previous value
Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review.
Context-only references
ESM-2 official resource

Original source ↗

Reviewed profile summary (2026-09-23): evidence-official-29d4b229a3aa426a6dfb, evidence-official-d7e5c63feb0e0e627625, evidence-official-28fc17fbe0c1d99da219: ESM README: Pre-trained Models and Main models; official facebook/esm2_t33_650M_UR50D README licence metadata and config.json

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: Not recorded
Retrieved: 2026-09-16T10:50:02Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.previous_value

Source artifact SHA-256: Not recorded

Hash scope: Hash scope not separately documented; inspect source record

Previous value
Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review.
Context-only references
facebook/esm2_t33_650M_UR50D: config.json

Original source ↗

Reviewed profile summary (2026-09-23): evidence-official-29d4b229a3aa426a6dfb, evidence-official-d7e5c63feb0e0e627625, evidence-official-28fc17fbe0c1d99da219: ESM README: Pre-trained Models and Main models; official facebook/esm2_t33_650M_UR50D README licence metadata and config.json

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: 08e4846e537177426273712802403f7ba8261b6c
Retrieved: 2026-09-16T20:04:02.230771+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.previous_value

Source artifact SHA-256: 539095c22efc52a09d6147074ba4ca119f76a890df5901213b2b55f7d2f96b2b

Hash scope: SHA-256 of retrieved original artifact bytes

Format: original_artifact

Inspected artifact

Previous value
Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review.
Context-only references
facebookresearch/esm: README.md

Original source ↗

Reviewed profile summary (2026-09-23): evidence-official-29d4b229a3aa426a6dfb, evidence-official-d7e5c63feb0e0e627625, evidence-official-28fc17fbe0c1d99da219: ESM README: Pre-trained Models and Main models; official facebook/esm2_t33_650M_UR50D README licence metadata and config.json

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: 2b369911bb5b4b0dda914521b9475cad1656b2ac
Retrieved: 2026-09-16T19:46:19.090082+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.previous_value

Source artifact SHA-256: 8b273c21a322fc9473d1b68d0dd40c8166ab2f89e4a190aa26ca87251b97cba9

Hash scope: SHA-256 of retrieved original artifact bytes

Format: original_artifact

Inspected artifact

Previous value
Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review.
Context-only references
facebook/esm2_t33_650M_UR50D: README.md

Original source ↗

Reviewed profile summary (2026-09-23): evidence-official-29d4b229a3aa426a6dfb, evidence-official-d7e5c63feb0e0e627625, evidence-official-28fc17fbe0c1d99da219: ESM README: Pre-trained Models and Main models; official facebook/esm2_t33_650M_UR50D README licence metadata and config.json

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: 08e4846e537177426273712802403f7ba8261b6c
Retrieved: 2026-09-16T20:04:02.230771+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.previous_value

Source artifact SHA-256: 462a2f24724e19c6be0efab926315c294a863c9a9770e2c8b3d859b2d81a07de

Hash scope: SHA-256 of retrieved original artifact bytes

Format: original_artifact

Inspected artifact

Source location
Reviewed profile summary (2026-09-23): evidence-official-29d4b229a3aa426a6dfb, evidence-official-d7e5c63feb0e0e627625, evidence-official-28fc17fbe0c1d99da219: ESM README: Pre-trained Models and Main models; official facebook/esm2_t33_650M_UR50D README licence metadata and config.json
Context-only references
ESM-2 official resource

Original source ↗

Reviewed profile summary (2026-09-23): evidence-official-29d4b229a3aa426a6dfb, evidence-official-d7e5c63feb0e0e627625, evidence-official-28fc17fbe0c1d99da219: ESM README: Pre-trained Models and Main models; official facebook/esm2_t33_650M_UR50D README licence metadata and config.json

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: Not recorded
Retrieved: 2026-09-16T10:50:02Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.source_locator

Source artifact SHA-256: Not recorded

Hash scope: Hash scope not separately documented; inspect source record

Source location
Reviewed profile summary (2026-09-23): evidence-official-29d4b229a3aa426a6dfb, evidence-official-d7e5c63feb0e0e627625, evidence-official-28fc17fbe0c1d99da219: ESM README: Pre-trained Models and Main models; official facebook/esm2_t33_650M_UR50D README licence metadata and config.json
Context-only references
facebook/esm2_t33_650M_UR50D: config.json

Original source ↗

Reviewed profile summary (2026-09-23): evidence-official-29d4b229a3aa426a6dfb, evidence-official-d7e5c63feb0e0e627625, evidence-official-28fc17fbe0c1d99da219: ESM README: Pre-trained Models and Main models; official facebook/esm2_t33_650M_UR50D README licence metadata and config.json

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: 08e4846e537177426273712802403f7ba8261b6c
Retrieved: 2026-09-16T20:04:02.230771+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 539095c22efc52a09d6147074ba4ca119f76a890df5901213b2b55f7d2f96b2b

Hash scope: SHA-256 of retrieved original artifact bytes

Format: original_artifact

Inspected artifact

How to read the evidence

Sources and history

Release 2026-10-23-5347695500ed · Record review: source checked

4 source records and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: metadata-correction-dbda47d5e57d18179096

areas
proteins-complexes
method types
foundation_model
field
description
previous value
Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review.
value
ESM-2 is a family of protein sequence encoders that produce representations for downstream protein analyses.
source locator
Reviewed profile summary (2026-09-23): evidence-official-29d4b229a3aa426a6dfb, evidence-official-d7e5c63feb0e0e627625, evidence-official-28fc17fbe0c1d99da219: ESM README: Pre-trained Models and Main models; official facebook/esm2_t33_650M_UR50D README licence metadata and config.json
review
method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked the new sources' licences against the arXiv abstract pages and Europe PMC, the 7 scFoundation pipeline descriptions against their abstracts, the language-model descriptions against their model cards and reports, and the TAPE architecture figures against the TAPE paper; all correct. The catalogue entries reuse reviewed profile summaries.; receipt: data/omics/qa-descriptions-20261011-b/review.json
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