RSALOR: description
Description of RSALOR
Evolutionary score that predicts mutational effects from the log-odds ratio of wild-type and mutant residue frequencies in related proteins, scaled by the residue's relative solvent accessibility.
Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
14 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Claimed field description Context-only references | Abstract: Residue conservation and solvent accessibility are (almost) all you need for predicting mutational effects in proteins qa-descriptions-20261011-a-source-rsalor2025: abstractText ('a simple evolutionary score, based on the log-odd ratio (LOR) of wild-type and mutated residue frequencies in evolutionary related proteins, when scaled by the residue's relative solvent accessibility (RSA)'); run-doc-proteingym-readme-md-144fe22b: baselines table, row RSALOR (MSA & Structure) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Europe PMC preprint record PPR/PPR974202 (title and abstract), bioRxiv 2025 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Claimed field description Context-only references | ProteinGym AMFR assay-level Spearman comparison qa-descriptions-20261011-a-source-rsalor2025: abstractText ('a simple evolutionary score, based on the log-odd ratio (LOR) of wild-type and mutated residue frequencies in evolutionary related proteins, when scaled by the residue's relative solvent accessibility (RSA)'); run-doc-proteingym-readme-md-144fe22b: baselines table, row RSALOR (MSA & Structure) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 144fe22b07dfaeec2b366f2346203a9838a55b4c | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Previous value Named prediction method identified in the cited primary source. Exact fitted configurations and scores are separate records. Context-only references | Abstract: Residue conservation and solvent accessibility are (almost) all you need for predicting mutational effects in proteins qa-descriptions-20261011-a-source-rsalor2025: abstractText ('a simple evolutionary score, based on the log-odd ratio (LOR) of wild-type and mutated residue frequencies in evolutionary related proteins, when scaled by the residue's relative solvent accessibility (RSA)'); run-doc-proteingym-readme-md-144fe22b: baselines table, row RSALOR (MSA & Structure) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Europe PMC preprint record PPR/PPR974202 (title and abstract), bioRxiv 2025 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Previous value Named prediction method identified in the cited primary source. Exact fitted configurations and scores are separate records. Context-only references | ProteinGym AMFR assay-level Spearman comparison qa-descriptions-20261011-a-source-rsalor2025: abstractText ('a simple evolutionary score, based on the log-odd ratio (LOR) of wild-type and mutated residue frequencies in evolutionary related proteins, when scaled by the residue's relative solvent accessibility (RSA)'); run-doc-proteingym-readme-md-144fe22b: baselines table, row RSALOR (MSA & Structure) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 144fe22b07dfaeec2b366f2346203a9838a55b4c | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location qa-descriptions-20261011-a-source-rsalor2025: abstractText ('a simple evolutionary score, based on the log-odd ratio (LOR) of wild-type and mutated residue frequencies in evolutionary related proteins, when scaled by the residue's relative solvent accessibility (RSA)'); run-doc-proteingym-readme-md-144fe22b: baselines table, row RSALOR (MSA & Structure) Context-only references | Abstract: Residue conservation and solvent accessibility are (almost) all you need for predicting mutational effects in proteins qa-descriptions-20261011-a-source-rsalor2025: abstractText ('a simple evolutionary score, based on the log-odd ratio (LOR) of wild-type and mutated residue frequencies in evolutionary related proteins, when scaled by the residue's relative solvent accessibility (RSA)'); run-doc-proteingym-readme-md-144fe22b: baselines table, row RSALOR (MSA & Structure) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Europe PMC preprint record PPR/PPR974202 (title and abstract), bioRxiv 2025 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Source location qa-descriptions-20261011-a-source-rsalor2025: abstractText ('a simple evolutionary score, based on the log-odd ratio (LOR) of wild-type and mutated residue frequencies in evolutionary related proteins, when scaled by the residue's relative solvent accessibility (RSA)'); run-doc-proteingym-readme-md-144fe22b: baselines table, row RSALOR (MSA & Structure) Context-only references | ProteinGym AMFR assay-level Spearman comparison qa-descriptions-20261011-a-source-rsalor2025: abstractText ('a simple evolutionary score, based on the log-odd ratio (LOR) of wild-type and mutated residue frequencies in evolutionary related proteins, when scaled by the residue's relative solvent accessibility (RSA)'); run-doc-proteingym-readme-md-144fe22b: baselines table, row RSALOR (MSA & Structure) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 144fe22b07dfaeec2b366f2346203a9838a55b4c | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed value Evolutionary score that predicts mutational effects from the log-odds ratio of wild-type and mutant residue frequencies in related proteins, scaled by the residue's relative solvent accessibility. Context-only references | Abstract: Residue conservation and solvent accessibility are (almost) all you need for predicting mutational effects in proteins qa-descriptions-20261011-a-source-rsalor2025: abstractText ('a simple evolutionary score, based on the log-odd ratio (LOR) of wild-type and mutated residue frequencies in evolutionary related proteins, when scaled by the residue's relative solvent accessibility (RSA)'); run-doc-proteingym-readme-md-144fe22b: baselines table, row RSALOR (MSA & Structure) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Europe PMC preprint record PPR/PPR974202 (title and abstract), bioRxiv 2025 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Claimed value Evolutionary score that predicts mutational effects from the log-odds ratio of wild-type and mutant residue frequencies in related proteins, scaled by the residue's relative solvent accessibility. Context-only references | ProteinGym AMFR assay-level Spearman comparison qa-descriptions-20261011-a-source-rsalor2025: abstractText ('a simple evolutionary score, based on the log-odd ratio (LOR) of wild-type and mutated residue frequencies in evolutionary related proteins, when scaled by the residue's relative solvent accessibility (RSA)'); run-doc-proteingym-readme-md-144fe22b: baselines table, row RSALOR (MSA & Structure) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 144fe22b07dfaeec2b366f2346203a9838a55b4c | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value. Context-only references | Abstract: Residue conservation and solvent accessibility are (almost) all you need for predicting mutational effects in proteins qa-descriptions-20261011-a-source-rsalor2025: abstractText ('a simple evolutionary score, based on the log-odd ratio (LOR) of wild-type and mutated residue frequencies in evolutionary related proteins, when scaled by the residue's relative solvent accessibility (RSA)'); run-doc-proteingym-readme-md-144fe22b: baselines table, row RSALOR (MSA & Structure) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Europe PMC preprint record PPR/PPR974202 (title and abstract), bioRxiv 2025 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Description Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value. Context-only references | ProteinGym AMFR assay-level Spearman comparison qa-descriptions-20261011-a-source-rsalor2025: abstractText ('a simple evolutionary score, based on the log-odd ratio (LOR) of wild-type and mutated residue frequencies in evolutionary related proteins, when scaled by the residue's relative solvent accessibility (RSA)'); run-doc-proteingym-readme-md-144fe22b: baselines table, row RSALOR (MSA & Structure) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 144fe22b07dfaeec2b366f2346203a9838a55b4c | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
2 source records and release history
- ProteinGym AMFR assay-level Spearman comparison · Original source · 144fe22b07dfaeec2b366f2346203a9838a55b4c
- Abstract: Residue conservation and solvent accessibility are (almost) all you need for predicting mutational effects in proteins · Original source · Europe PMC preprint record PPR/PPR974202 (title and abstract), bioRxiv 2025
Technical metadata and extraction receipts
Stable ID: metadata-correction-d58666fe20d97459931f
- areas
- proteins-complexes
- field
- description
- previous value
- Named prediction method identified in the cited primary source. Exact fitted configurations and scores are separate records.
- value
- Evolutionary score that predicts mutational effects from the log-odds ratio of wild-type and mutant residue frequencies in related proteins, scaled by the residue's relative solvent accessibility.
- source locator
- qa-descriptions-20261011-a-source-rsalor2025: abstractText ('a simple evolutionary score, based on the log-odd ratio (LOR) of wild-type and mutated residue frequencies in evolutionary related proteins, when scaled by the residue's relative solvent accessibility (RSA)'); run-doc-proteingym-readme-md-144fe22b: baselines table, row RSALOR (MSA & Structure)
- review
- method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked the 10 method and model descriptions against their sources (EVmutation, GEMME and RSALOR abstracts, the FramePool k-mer random forests, the RhoMax BLASSO text) and spot-checked the 49 mRNABench rows against Appendix A; all accurate. Licences on the 3 new sources match their Europe PMC records. At the reviewer's suggestion, the en dash printed in some checkpoint names is written as a hyphen in the descriptions.; receipt: data/omics/qa-descriptions-20261011-a/review.json
Related records
- subject: RSALOR