Evidence claim

ProkBERT: description

Description of ProkBERT

ProkBERT is a family of microbial DNA encoders used for sequence representation, promoter prediction and phage identification.

Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

35 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Claimed field description Context-only references	ProkBERT official resource Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-2efbfaba5a1c09f4f7fa, evidence-official-965600234c25fbd104c8, evidence-official-ee6e270af125ddf16eb3, evidence-official-5e268f31f0347fc5564c: ProkBERT paper Section 2.1.2 and Table 1; official ProkBERT-mini card: Model Description and licence metadata Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Not recorded Retrieved: 2026-09-16T10:50:02Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record
Claimed field description Context-only references	nbrg-ppcu/prokbert: README.md Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-2efbfaba5a1c09f4f7fa, evidence-official-965600234c25fbd104c8, evidence-official-ee6e270af125ddf16eb3, evidence-official-5e268f31f0347fc5564c: ProkBERT paper Section 2.1.2 and Table 1; official ProkBERT-mini card: Model Description and licence metadata Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 8670ae92b816cff158a0b85647a8dea122e251eb Retrieved: 2026-09-16T19:46:19.913949+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `29de39c6ad006ce704ab14240cfd97af93da411fb63ec89ebe499c2646928cfc` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	prokbert: Journal full-text XML Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-2efbfaba5a1c09f4f7fa, evidence-official-965600234c25fbd104c8, evidence-official-ee6e270af125ddf16eb3, evidence-official-5e268f31f0347fc5564c: ProkBERT paper Section 2.1.2 and Table 1; official ProkBERT-mini card: Model Description and licence metadata Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied Retrieved: 2026-09-16T19:53:03.847832+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `8610e2a54aa877c8dc565a9cdb6e82099f284c5e0907a52cab18d994ea732436` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	neuralbioinfo/prokbert-mini: README.md Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-2efbfaba5a1c09f4f7fa, evidence-official-965600234c25fbd104c8, evidence-official-ee6e270af125ddf16eb3, evidence-official-5e268f31f0347fc5564c: ProkBERT paper Section 2.1.2 and Table 1; official ProkBERT-mini card: Model Description and licence metadata Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: feb2520a43cd9cdb5b3d8477e47209dbcb55d1dc Retrieved: 2026-09-16T20:04:02.231162+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `172ec5b600e342302df5a22d84b12e1ab61d05722adda549b6d82f65e5c5d658` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	neuralbioinfo/prokbert-mini: config.json Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-2efbfaba5a1c09f4f7fa, evidence-official-965600234c25fbd104c8, evidence-official-ee6e270af125ddf16eb3, evidence-official-5e268f31f0347fc5564c: ProkBERT paper Section 2.1.2 and Table 1; official ProkBERT-mini card: Model Description and licence metadata Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: feb2520a43cd9cdb5b3d8477e47209dbcb55d1dc Retrieved: 2026-09-16T20:04:02.231162+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `6d68c922f919e0de3f87de60c07ebc1823927df806645937f94911c5b8245de6` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	ProkBERT official resource Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-2efbfaba5a1c09f4f7fa, evidence-official-965600234c25fbd104c8, evidence-official-ee6e270af125ddf16eb3, evidence-official-5e268f31f0347fc5564c: ProkBERT paper Section 2.1.2 and Table 1; official ProkBERT-mini card: Model Description and licence metadata Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Not recorded Retrieved: 2026-09-16T10:50:02Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	nbrg-ppcu/prokbert: README.md Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-2efbfaba5a1c09f4f7fa, evidence-official-965600234c25fbd104c8, evidence-official-ee6e270af125ddf16eb3, evidence-official-5e268f31f0347fc5564c: ProkBERT paper Section 2.1.2 and Table 1; official ProkBERT-mini card: Model Description and licence metadata Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 8670ae92b816cff158a0b85647a8dea122e251eb Retrieved: 2026-09-16T19:46:19.913949+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `29de39c6ad006ce704ab14240cfd97af93da411fb63ec89ebe499c2646928cfc` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	prokbert: Journal full-text XML Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-2efbfaba5a1c09f4f7fa, evidence-official-965600234c25fbd104c8, evidence-official-ee6e270af125ddf16eb3, evidence-official-5e268f31f0347fc5564c: ProkBERT paper Section 2.1.2 and Table 1; official ProkBERT-mini card: Model Description and licence metadata Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied Retrieved: 2026-09-16T19:53:03.847832+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `8610e2a54aa877c8dc565a9cdb6e82099f284c5e0907a52cab18d994ea732436` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	neuralbioinfo/prokbert-mini: README.md Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-2efbfaba5a1c09f4f7fa, evidence-official-965600234c25fbd104c8, evidence-official-ee6e270af125ddf16eb3, evidence-official-5e268f31f0347fc5564c: ProkBERT paper Section 2.1.2 and Table 1; official ProkBERT-mini card: Model Description and licence metadata Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: feb2520a43cd9cdb5b3d8477e47209dbcb55d1dc Retrieved: 2026-09-16T20:04:02.231162+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `172ec5b600e342302df5a22d84b12e1ab61d05722adda549b6d82f65e5c5d658` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	neuralbioinfo/prokbert-mini: config.json Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-2efbfaba5a1c09f4f7fa, evidence-official-965600234c25fbd104c8, evidence-official-ee6e270af125ddf16eb3, evidence-official-5e268f31f0347fc5564c: ProkBERT paper Section 2.1.2 and Table 1; official ProkBERT-mini card: Model Description and licence metadata Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: feb2520a43cd9cdb5b3d8477e47209dbcb55d1dc Retrieved: 2026-09-16T20:04:02.231162+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `6d68c922f919e0de3f87de60c07ebc1823927df806645937f94911c5b8245de6` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact

How to read the evidence

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

5 source records and release history

ProkBERT official resource · Original source · Not reported
nbrg-ppcu/prokbert: README.md · Original source · 8670ae92b816cff158a0b85647a8dea122e251eb
neuralbioinfo/prokbert-mini: README.md · Original source · feb2520a43cd9cdb5b3d8477e47209dbcb55d1dc
neuralbioinfo/prokbert-mini: config.json · Original source · feb2520a43cd9cdb5b3d8477e47209dbcb55d1dc
prokbert: Journal full-text XML · Original source · Retrieved page snapshot; no immutable publisher revision supplied

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Technical metadata and extraction receipts

Stable ID: metadata-correction-d305b3f2b688c319424b

areas: microbes-communities
method types: foundation_model
field: description
previous value: Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review.
value: ProkBERT is a family of microbial DNA encoders used for sequence representation, promoter prediction and phage identification.
source locator: Reviewed profile summary (2026-09-16): evidence-official-2efbfaba5a1c09f4f7fa, evidence-official-965600234c25fbd104c8, evidence-official-ee6e270af125ddf16eb3, evidence-official-5e268f31f0347fc5564c: ProkBERT paper Section 2.1.2 and Table 1; official ProkBERT-mini card: Model Description and licence metadata
review: method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked the new sources' licences against the arXiv abstract pages and Europe PMC, the 7 scFoundation pipeline descriptions against their abstracts, the language-model descriptions against their model cards and reports, and the TAPE architecture figures against the TAPE paper; all correct. The catalogue entries reuse reviewed profile summaries.; receipt: data/omics/qa-descriptions-20261011-b/review.json

Related records

subject: ProkBERT

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