ernierna: description
Description of ernierna
Linear probe, trained per mRNABench task, on frozen embeddings averaged over nucleotides from ernierna, an ERNIE-RNA checkpoint; ERNIE-RNA is a Transformer RNA model pretrained on 20 million non-coding RNAs with structural information added as attention-mask biases.
Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
7 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Claimed field description Context-only references | mRNABench: A curated benchmark for mature mRNA property and function prediction expansion-p3-mrnabench-2025: Appendix A, Overview of Evaluated Models (family and variant rows; naive baselines paragraph); Section 4.3, Linear Probing ('training a linear classifier on frozen embeddings'; 'averaging over per-nucleotide embeddings') Version: preprint archived 2025-07-08 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Previous value Named representation or feature baseline with a task-specific linear probe; the complete evaluated pipeline is distinct from its underlying model. Context-only references | mRNABench: A curated benchmark for mature mRNA property and function prediction expansion-p3-mrnabench-2025: Appendix A, Overview of Evaluated Models (family and variant rows; naive baselines paragraph); Section 4.3, Linear Probing ('training a linear classifier on frozen embeddings'; 'averaging over per-nucleotide embeddings') Version: preprint archived 2025-07-08 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Source location expansion-p3-mrnabench-2025: Appendix A, Overview of Evaluated Models (family and variant rows; naive baselines paragraph); Section 4.3, Linear Probing ('training a linear classifier on frozen embeddings'; 'averaging over per-nucleotide embeddings') Context-only references | mRNABench: A curated benchmark for mature mRNA property and function prediction expansion-p3-mrnabench-2025: Appendix A, Overview of Evaluated Models (family and variant rows; naive baselines paragraph); Section 4.3, Linear Probing ('training a linear classifier on frozen embeddings'; 'averaging over per-nucleotide embeddings') Version: preprint archived 2025-07-08 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Claimed value Linear probe, trained per mRNABench task, on frozen embeddings averaged over nucleotides from ernierna, an ERNIE-RNA checkpoint; ERNIE-RNA is a Transformer RNA model pretrained on 20 million non-coding RNAs with structural information added as attention-mask biases. Context-only references | mRNABench: A curated benchmark for mature mRNA property and function prediction expansion-p3-mrnabench-2025: Appendix A, Overview of Evaluated Models (family and variant rows; naive baselines paragraph); Section 4.3, Linear Probing ('training a linear classifier on frozen embeddings'; 'averaging over per-nucleotide embeddings') Version: preprint archived 2025-07-08 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Description Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value. Context-only references | mRNABench: A curated benchmark for mature mRNA property and function prediction expansion-p3-mrnabench-2025: Appendix A, Overview of Evaluated Models (family and variant rows; naive baselines paragraph); Section 4.3, Linear Probing ('training a linear classifier on frozen embeddings'; 'averaging over per-nucleotide embeddings') Version: preprint archived 2025-07-08 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: subject mrnabench-variants-2025-method-ernierna Context-only references | mRNABench: A curated benchmark for mature mRNA property and function prediction expansion-p3-mrnabench-2025: Appendix A, Overview of Evaluated Models (family and variant rows; naive baselines paragraph); Section 4.3, Linear Probing ('training a linear classifier on frozen embeddings'; 'averaging over per-nucleotide embeddings') Version: preprint archived 2025-07-08 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Name ernierna: description Context-only references | mRNABench: A curated benchmark for mature mRNA property and function prediction expansion-p3-mrnabench-2025: Appendix A, Overview of Evaluated Models (family and variant rows; naive baselines paragraph); Section 4.3, Linear Probing ('training a linear classifier on frozen embeddings'; 'averaging over per-nucleotide embeddings') Version: preprint archived 2025-07-08 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
1 source record and release history
- mRNABench: A curated benchmark for mature mRNA property and function prediction · Original source · preprint archived 2025-07-08
Technical metadata and extraction receipts
Stable ID: metadata-correction-c971e3150331ced3b50c
- areas
- rna-transcriptomes
- field
- description
- previous value
- Named representation or feature baseline with a task-specific linear probe; the complete evaluated pipeline is distinct from its underlying model.
- value
- Linear probe, trained per mRNABench task, on frozen embeddings averaged over nucleotides from ernierna, an ERNIE-RNA checkpoint; ERNIE-RNA is a Transformer RNA model pretrained on 20 million non-coding RNAs with structural information added as attention-mask biases.
- source locator
- expansion-p3-mrnabench-2025: Appendix A, Overview of Evaluated Models (family and variant rows; naive baselines paragraph); Section 4.3, Linear Probing ('training a linear classifier on frozen embeddings'; 'averaging over per-nucleotide embeddings')
- review
- method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked the 10 method and model descriptions against their sources (EVmutation, GEMME and RSALOR abstracts, the FramePool k-mer random forests, the RhoMax BLASSO text) and spot-checked the 49 mRNABench rows against Appendix A; all accurate. Licences on the 3 new sources match their Europe PMC records. At the reviewer's suggestion, the en dash printed in some checkpoint names is written as a hyphen in the descriptions.; receipt: data/omics/qa-descriptions-20261011-a/review.json
Related records
- subject: ernierna