Evidence claim

Geneformer: description

Description of Geneformer

Geneformer represents single-cell transcriptomes as ranked genes and learns contextual gene and cell representations.

Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

21 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-23-5347695500ed
Property and statement	Original source and location	Review and provenance
Claimed field description Context-only references	Geneformer official resource Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-d3d9afa5c6172982ed01, evidence-official-f60303c5eaa60ed9c77a: README.md: Model Description, pretrained model list, Application, Installation and licence frontmatter Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Not recorded Retrieved: 2026-09-16T10:50:02Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record
Claimed field description Context-only references	ctheodoris/Geneformer: README.md Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-d3d9afa5c6172982ed01, evidence-official-f60303c5eaa60ed9c77a: README.md: Model Description, pretrained model list, Application, Installation and licence frontmatter Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 1f7fbae4e469a5f4f1af8c111a529cfe1b3829f5 Retrieved: 2026-09-16T19:46:20.640731+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `56d6e570b349cbedae9a54634421c94e7af8ea467ce0fdd79193372ae3cbdbd8` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	ctheodoris/Geneformer: config.json Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-d3d9afa5c6172982ed01, evidence-official-f60303c5eaa60ed9c77a: README.md: Model Description, pretrained model list, Application, Installation and licence frontmatter Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 1f7fbae4e469a5f4f1af8c111a529cfe1b3829f5 Retrieved: 2026-09-16T19:46:20.640731+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `2cc4af3442644e84af71814a607b61c958d7b4e5ebde6791ab77b5f534ac6f6e` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	Geneformer official resource Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-d3d9afa5c6172982ed01, evidence-official-f60303c5eaa60ed9c77a: README.md: Model Description, pretrained model list, Application, Installation and licence frontmatter Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Not recorded Retrieved: 2026-09-16T10:50:02Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	ctheodoris/Geneformer: README.md Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-d3d9afa5c6172982ed01, evidence-official-f60303c5eaa60ed9c77a: README.md: Model Description, pretrained model list, Application, Installation and licence frontmatter Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 1f7fbae4e469a5f4f1af8c111a529cfe1b3829f5 Retrieved: 2026-09-16T19:46:20.640731+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `56d6e570b349cbedae9a54634421c94e7af8ea467ce0fdd79193372ae3cbdbd8` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	ctheodoris/Geneformer: config.json Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-d3d9afa5c6172982ed01, evidence-official-f60303c5eaa60ed9c77a: README.md: Model Description, pretrained model list, Application, Installation and licence frontmatter Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 1f7fbae4e469a5f4f1af8c111a529cfe1b3829f5 Retrieved: 2026-09-16T19:46:20.640731+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `2cc4af3442644e84af71814a607b61c958d7b4e5ebde6791ab77b5f534ac6f6e` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Source location Reviewed profile summary (2026-09-16): evidence-official-d3d9afa5c6172982ed01, evidence-official-f60303c5eaa60ed9c77a: README.md: Model Description, pretrained model list, Application, Installation and licence frontmatter Context-only references	Geneformer official resource Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-d3d9afa5c6172982ed01, evidence-official-f60303c5eaa60ed9c77a: README.md: Model Description, pretrained model list, Application, Installation and licence frontmatter Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Not recorded Retrieved: 2026-09-16T10:50:02Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record
Source location Reviewed profile summary (2026-09-16): evidence-official-d3d9afa5c6172982ed01, evidence-official-f60303c5eaa60ed9c77a: README.md: Model Description, pretrained model list, Application, Installation and licence frontmatter Context-only references	ctheodoris/Geneformer: README.md Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-d3d9afa5c6172982ed01, evidence-official-f60303c5eaa60ed9c77a: README.md: Model Description, pretrained model list, Application, Installation and licence frontmatter Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 1f7fbae4e469a5f4f1af8c111a529cfe1b3829f5 Retrieved: 2026-09-16T19:46:20.640731+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `56d6e570b349cbedae9a54634421c94e7af8ea467ce0fdd79193372ae3cbdbd8` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Source location Reviewed profile summary (2026-09-16): evidence-official-d3d9afa5c6172982ed01, evidence-official-f60303c5eaa60ed9c77a: README.md: Model Description, pretrained model list, Application, Installation and licence frontmatter Context-only references	ctheodoris/Geneformer: config.json Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-d3d9afa5c6172982ed01, evidence-official-f60303c5eaa60ed9c77a: README.md: Model Description, pretrained model list, Application, Installation and licence frontmatter Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 1f7fbae4e469a5f4f1af8c111a529cfe1b3829f5 Retrieved: 2026-09-16T19:46:20.640731+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `2cc4af3442644e84af71814a607b61c958d7b4e5ebde6791ab77b5f534ac6f6e` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed value Geneformer represents single-cell transcriptomes as ranked genes and learns contextual gene and cell representations. Context-only references	Geneformer official resource Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-d3d9afa5c6172982ed01, evidence-official-f60303c5eaa60ed9c77a: README.md: Model Description, pretrained model list, Application, Installation and licence frontmatter Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Not recorded Retrieved: 2026-09-16T10:50:02Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.value` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record

How to read the evidence

Sources and history

Release 2026-10-23-5347695500ed · Record review: source checked

3 source records and release history

Geneformer official resource · Original source · Not reported
ctheodoris/Geneformer: README.md · Original source · 1f7fbae4e469a5f4f1af8c111a529cfe1b3829f5
ctheodoris/Geneformer: config.json · Original source · 1f7fbae4e469a5f4f1af8c111a529cfe1b3829f5

Download this release (gzip)

Technical metadata and extraction receipts

Stable ID: metadata-correction-af3fc6b8b7682ab5dd4b

areas: cells-tissues
method types: foundation_model
field: description
previous value: Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review.
value: Geneformer represents single-cell transcriptomes as ranked genes and learns contextual gene and cell representations.
source locator: Reviewed profile summary (2026-09-16): evidence-official-d3d9afa5c6172982ed01, evidence-official-f60303c5eaa60ed9c77a: README.md: Model Description, pretrained model list, Application, Installation and licence frontmatter
review: method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked the new sources' licences against the arXiv abstract pages and Europe PMC, the 7 scFoundation pipeline descriptions against their abstracts, the language-model descriptions against their model cards and reports, and the TAPE architecture figures against the TAPE paper; all correct. The catalogue entries reuse reviewed profile summaries.; receipt: data/omics/qa-descriptions-20261011-b/review.json

Related records

subject: Geneformer

Suggest a correction