Evidence claim

Nucleotide Transformer v2: description

Description of Nucleotide Transformer v2

Nucleotide Transformer v2 represents DNA using an encoder pretrained on multiple species.

Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

56 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Claimed field description Context-only references	Nucleotide Transformer v2 official resource Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-4abb9affb1a9e5438c91, evidence-official-6b79ddfdd330693bf4fb, evidence-official-18d8f4d5fc3f6616922d, evidence-official-657e83427ab59f3aec83, evidence-official-56f02d45976d011d80aa, evidence-official-4920952f9b3c4b8909a0, evidence-official-aadbeb0f10ec55d34f5f: README.md: Model Summary, Training data and licence metadata; config.json; Nucleotide Transformer paper Methods: Architecture and Training (v2); source conflict with 50M card retained Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Not recorded Retrieved: 2026-09-16T10:50:02Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record
Claimed field description Context-only references	instadeepai/nucleotide-transformer: README.md Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-4abb9affb1a9e5438c91, evidence-official-6b79ddfdd330693bf4fb, evidence-official-18d8f4d5fc3f6616922d, evidence-official-657e83427ab59f3aec83, evidence-official-56f02d45976d011d80aa, evidence-official-4920952f9b3c4b8909a0, evidence-official-aadbeb0f10ec55d34f5f: README.md: Model Summary, Training data and licence metadata; config.json; Nucleotide Transformer paper Methods: Architecture and Training (v2); source conflict with 50M card retained Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2dc37b86e16a6970fbc731751f7719d9f676f7f9 Retrieved: 2026-09-16T19:46:19.364532+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `9f51bbb20c4c5c36e77fb03ca1c5c36236e287c48a1ee31f53150545d421ec25` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	instadeepai/nucleotide-transformer: docs/segment_nt.md Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-4abb9affb1a9e5438c91, evidence-official-6b79ddfdd330693bf4fb, evidence-official-18d8f4d5fc3f6616922d, evidence-official-657e83427ab59f3aec83, evidence-official-56f02d45976d011d80aa, evidence-official-4920952f9b3c4b8909a0, evidence-official-aadbeb0f10ec55d34f5f: README.md: Model Summary, Training data and licence metadata; config.json; Nucleotide Transformer paper Methods: Architecture and Training (v2); source conflict with 50M card retained Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2dc37b86e16a6970fbc731751f7719d9f676f7f9 Retrieved: 2026-09-16T19:46:19.364532+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `8eec4580ba64ab944fb9b42674be70ffe793135f3503cce8640f5b08f8290f7a` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	InstaDeepAI/nucleotide-transformer-v2-50m-multi-species: README.md Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-4abb9affb1a9e5438c91, evidence-official-6b79ddfdd330693bf4fb, evidence-official-18d8f4d5fc3f6616922d, evidence-official-657e83427ab59f3aec83, evidence-official-56f02d45976d011d80aa, evidence-official-4920952f9b3c4b8909a0, evidence-official-aadbeb0f10ec55d34f5f: README.md: Model Summary, Training data and licence metadata; config.json; Nucleotide Transformer paper Methods: Architecture and Training (v2); source conflict with 50M card retained Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 81b29e5786726d891dbf929404ef20adca5b36f1 Retrieved: 2026-09-16T19:46:20.607357+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `e526d7b98f106bc2ca9ba73fa166ff5fd62853812e9757a6692eeedf25e42923` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	instadeepai/nucleotide-transformer: docs/agro_nucleotide_transformer.md Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-4abb9affb1a9e5438c91, evidence-official-6b79ddfdd330693bf4fb, evidence-official-18d8f4d5fc3f6616922d, evidence-official-657e83427ab59f3aec83, evidence-official-56f02d45976d011d80aa, evidence-official-4920952f9b3c4b8909a0, evidence-official-aadbeb0f10ec55d34f5f: README.md: Model Summary, Training data and licence metadata; config.json; Nucleotide Transformer paper Methods: Architecture and Training (v2); source conflict with 50M card retained Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2dc37b86e16a6970fbc731751f7719d9f676f7f9 Retrieved: 2026-09-16T19:46:19.364532+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `23e27d40473bbabadac45c56e8e282349f0b053da85fda89ff2125b5fe381fc6` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	instadeepai/nucleotide-transformer: docs/nucleotide_transformer.md Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-4abb9affb1a9e5438c91, evidence-official-6b79ddfdd330693bf4fb, evidence-official-18d8f4d5fc3f6616922d, evidence-official-657e83427ab59f3aec83, evidence-official-56f02d45976d011d80aa, evidence-official-4920952f9b3c4b8909a0, evidence-official-aadbeb0f10ec55d34f5f: README.md: Model Summary, Training data and licence metadata; config.json; Nucleotide Transformer paper Methods: Architecture and Training (v2); source conflict with 50M card retained Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2dc37b86e16a6970fbc731751f7719d9f676f7f9 Retrieved: 2026-09-16T19:46:19.364532+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `ab16d582de98652526b5cebb120eec969328f9db29dc741826bcd81c397e0672` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	InstaDeepAI/nucleotide-transformer-v2-50m-multi-species: config.json Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-4abb9affb1a9e5438c91, evidence-official-6b79ddfdd330693bf4fb, evidence-official-18d8f4d5fc3f6616922d, evidence-official-657e83427ab59f3aec83, evidence-official-56f02d45976d011d80aa, evidence-official-4920952f9b3c4b8909a0, evidence-official-aadbeb0f10ec55d34f5f: README.md: Model Summary, Training data and licence metadata; config.json; Nucleotide Transformer paper Methods: Architecture and Training (v2); source conflict with 50M card retained Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 81b29e5786726d891dbf929404ef20adca5b36f1 Retrieved: 2026-09-16T19:46:20.607357+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `e20f497248c7cb264c7cd4582dbcfd52dc4cbf74a97fc711559b8c8f71c635db` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	nt: Journal full-text XML Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-4abb9affb1a9e5438c91, evidence-official-6b79ddfdd330693bf4fb, evidence-official-18d8f4d5fc3f6616922d, evidence-official-657e83427ab59f3aec83, evidence-official-56f02d45976d011d80aa, evidence-official-4920952f9b3c4b8909a0, evidence-official-aadbeb0f10ec55d34f5f: README.md: Model Summary, Training data and licence metadata; config.json; Nucleotide Transformer paper Methods: Architecture and Training (v2); source conflict with 50M card retained Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Retrieved page snapshot; no immutable publisher revision supplied Retrieved: 2026-09-16T20:16:14.422628+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `7c3b78a4f38ef053a08e466222e5662dd9711d91c535512d0b35d459d1fc7249` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	Nucleotide Transformer v2 official resource Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-4abb9affb1a9e5438c91, evidence-official-6b79ddfdd330693bf4fb, evidence-official-18d8f4d5fc3f6616922d, evidence-official-657e83427ab59f3aec83, evidence-official-56f02d45976d011d80aa, evidence-official-4920952f9b3c4b8909a0, evidence-official-aadbeb0f10ec55d34f5f: README.md: Model Summary, Training data and licence metadata; config.json; Nucleotide Transformer paper Methods: Architecture and Training (v2); source conflict with 50M card retained Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Not recorded Retrieved: 2026-09-16T10:50:02Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	instadeepai/nucleotide-transformer: README.md Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-4abb9affb1a9e5438c91, evidence-official-6b79ddfdd330693bf4fb, evidence-official-18d8f4d5fc3f6616922d, evidence-official-657e83427ab59f3aec83, evidence-official-56f02d45976d011d80aa, evidence-official-4920952f9b3c4b8909a0, evidence-official-aadbeb0f10ec55d34f5f: README.md: Model Summary, Training data and licence metadata; config.json; Nucleotide Transformer paper Methods: Architecture and Training (v2); source conflict with 50M card retained Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2dc37b86e16a6970fbc731751f7719d9f676f7f9 Retrieved: 2026-09-16T19:46:19.364532+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `9f51bbb20c4c5c36e77fb03ca1c5c36236e287c48a1ee31f53150545d421ec25` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact

How to read the evidence

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

8 source records and release history

Nucleotide Transformer v2 official resource · Original source · Not reported
InstaDeepAI/nucleotide-transformer-v2-50m-multi-species: README.md · Original source · 81b29e5786726d891dbf929404ef20adca5b36f1
InstaDeepAI/nucleotide-transformer-v2-50m-multi-species: config.json · Original source · 81b29e5786726d891dbf929404ef20adca5b36f1
instadeepai/nucleotide-transformer: README.md · Original source · 2dc37b86e16a6970fbc731751f7719d9f676f7f9
instadeepai/nucleotide-transformer: docs/nucleotide_transformer.md · Original source · 2dc37b86e16a6970fbc731751f7719d9f676f7f9
instadeepai/nucleotide-transformer: docs/agro_nucleotide_transformer.md · Original source · 2dc37b86e16a6970fbc731751f7719d9f676f7f9
instadeepai/nucleotide-transformer: docs/segment_nt.md · Original source · 2dc37b86e16a6970fbc731751f7719d9f676f7f9
nt: Journal full-text XML · Original source · Retrieved page snapshot; no immutable publisher revision supplied

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Technical metadata and extraction receipts

Stable ID: metadata-correction-a7169d0202d6adf3751b

areas: dna-genomes
method types: foundation_model
field: description
previous value: Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review.
value: Nucleotide Transformer v2 represents DNA using an encoder pretrained on multiple species.
source locator: Reviewed profile summary (2026-09-16): evidence-official-4abb9affb1a9e5438c91, evidence-official-6b79ddfdd330693bf4fb, evidence-official-18d8f4d5fc3f6616922d, evidence-official-657e83427ab59f3aec83, evidence-official-56f02d45976d011d80aa, evidence-official-4920952f9b3c4b8909a0, evidence-official-aadbeb0f10ec55d34f5f: README.md: Model Summary, Training data and licence metadata; config.json; Nucleotide Transformer paper Methods: Architecture and Training (v2); source conflict with 50M card retained
review: method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked the new sources' licences against the arXiv abstract pages and Europe PMC, the 7 scFoundation pipeline descriptions against their abstracts, the language-model descriptions against their model cards and reports, and the TAPE architecture figures against the TAPE paper; all correct. The catalogue entries reuse reviewed profile summaries.; receipt: data/omics/qa-descriptions-20261011-b/review.json

Related records

subject: Nucleotide Transformer v2

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