Evidence claim

ESM-2 650M embeddings + classifier: description

Description of ESM-2 650M embeddings + classifier

Chimeric antibody-deamidation predictor: a global module of ESM-2 650M embeddings of the full antibody sequence is concatenated with a local windowed-sequence module and classified by a dense head.

Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value.

Evidence

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Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

14 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Claimed field description Context-only references	The Accurate Prediction of Antibody Deamidations by Combining High-Throughput Automated Peptide Mapping and Protein Language Model-Based Deep Learning Original source ↗ Reviewed profile (2026-09-16): summary at 3. Results/3.4. Performance Evaluation of Models (paragraph 4); Abstract (paragraph 1); architecture fact at Abstract (paragraph 1); 4. Discussion and Conclusions (paragraph 2); description text also read at 3. Results/3.3 Model architecture (chimeric model figure); 2. Methods (esm2_t33_650M_UR50D selection) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: journal full text in PMC Retrieved: 2026-09-16T10:33:38.478Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `aa049f6d78e29540ba902a0d3b7f53d49e9833e4dad9869f79ac27664e8c150b` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Claimed field description Context-only references	facebookresearch/esm README.md Original source ↗ Reviewed profile (2026-09-16): summary at 3. Results/3.4. Performance Evaluation of Models (paragraph 4); Abstract (paragraph 1); architecture fact at Abstract (paragraph 1); 4. Discussion and Conclusions (paragraph 2); description text also read at 3. Results/3.3 Model architecture (chimeric model figure); 2. Methods (esm2_t33_650M_UR50D selection) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2b369911bb5b4b0dda914521b9475cad1656b2ac Retrieved: 2026-09-16T20:00:00.816433+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `8b273c21a322fc9473d1b68d0dd40c8166ab2f89e4a190aa26ca87251b97cba9` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Previous value Identity as reported in this paper. Unspecified versions are not assumed equivalent to other papers. Context-only references	The Accurate Prediction of Antibody Deamidations by Combining High-Throughput Automated Peptide Mapping and Protein Language Model-Based Deep Learning Original source ↗ Reviewed profile (2026-09-16): summary at 3. Results/3.4. Performance Evaluation of Models (paragraph 4); Abstract (paragraph 1); architecture fact at Abstract (paragraph 1); 4. Discussion and Conclusions (paragraph 2); description text also read at 3. Results/3.3 Model architecture (chimeric model figure); 2. Methods (esm2_t33_650M_UR50D selection) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: journal full text in PMC Retrieved: 2026-09-16T10:33:38.478Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `aa049f6d78e29540ba902a0d3b7f53d49e9833e4dad9869f79ac27664e8c150b` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Previous value Identity as reported in this paper. Unspecified versions are not assumed equivalent to other papers. Context-only references	facebookresearch/esm README.md Original source ↗ Reviewed profile (2026-09-16): summary at 3. Results/3.4. Performance Evaluation of Models (paragraph 4); Abstract (paragraph 1); architecture fact at Abstract (paragraph 1); 4. Discussion and Conclusions (paragraph 2); description text also read at 3. Results/3.3 Model architecture (chimeric model figure); 2. Methods (esm2_t33_650M_UR50D selection) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2b369911bb5b4b0dda914521b9475cad1656b2ac Retrieved: 2026-09-16T20:00:00.816433+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `8b273c21a322fc9473d1b68d0dd40c8166ab2f89e4a190aa26ca87251b97cba9` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Source location Reviewed profile (2026-09-16): summary at 3. Results/3.4. Performance Evaluation of Models (paragraph 4); Abstract (paragraph 1); architecture fact at Abstract (paragraph 1); 4. Discussion and Conclusions (paragraph 2); description text also read at 3. Results/3.3 Model architecture (chimeric model figure); 2. Methods (esm2_t33_650M_UR50D selection) Context-only references	The Accurate Prediction of Antibody Deamidations by Combining High-Throughput Automated Peptide Mapping and Protein Language Model-Based Deep Learning Original source ↗ Reviewed profile (2026-09-16): summary at 3. Results/3.4. Performance Evaluation of Models (paragraph 4); Abstract (paragraph 1); architecture fact at Abstract (paragraph 1); 4. Discussion and Conclusions (paragraph 2); description text also read at 3. Results/3.3 Model architecture (chimeric model figure); 2. Methods (esm2_t33_650M_UR50D selection) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: journal full text in PMC Retrieved: 2026-09-16T10:33:38.478Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `aa049f6d78e29540ba902a0d3b7f53d49e9833e4dad9869f79ac27664e8c150b` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Source location Reviewed profile (2026-09-16): summary at 3. Results/3.4. Performance Evaluation of Models (paragraph 4); Abstract (paragraph 1); architecture fact at Abstract (paragraph 1); 4. Discussion and Conclusions (paragraph 2); description text also read at 3. Results/3.3 Model architecture (chimeric model figure); 2. Methods (esm2_t33_650M_UR50D selection) Context-only references	facebookresearch/esm README.md Original source ↗ Reviewed profile (2026-09-16): summary at 3. Results/3.4. Performance Evaluation of Models (paragraph 4); Abstract (paragraph 1); architecture fact at Abstract (paragraph 1); 4. Discussion and Conclusions (paragraph 2); description text also read at 3. Results/3.3 Model architecture (chimeric model figure); 2. Methods (esm2_t33_650M_UR50D selection) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2b369911bb5b4b0dda914521b9475cad1656b2ac Retrieved: 2026-09-16T20:00:00.816433+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `8b273c21a322fc9473d1b68d0dd40c8166ab2f89e4a190aa26ca87251b97cba9` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Claimed value Chimeric antibody-deamidation predictor: a global module of ESM-2 650M embeddings of the full antibody sequence is concatenated with a local windowed-sequence module and classified by a dense head. Context-only references	The Accurate Prediction of Antibody Deamidations by Combining High-Throughput Automated Peptide Mapping and Protein Language Model-Based Deep Learning Original source ↗ Reviewed profile (2026-09-16): summary at 3. Results/3.4. Performance Evaluation of Models (paragraph 4); Abstract (paragraph 1); architecture fact at Abstract (paragraph 1); 4. Discussion and Conclusions (paragraph 2); description text also read at 3. Results/3.3 Model architecture (chimeric model figure); 2. Methods (esm2_t33_650M_UR50D selection) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: journal full text in PMC Retrieved: 2026-09-16T10:33:38.478Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.value` Source artifact SHA-256: `aa049f6d78e29540ba902a0d3b7f53d49e9833e4dad9869f79ac27664e8c150b` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Claimed value Chimeric antibody-deamidation predictor: a global module of ESM-2 650M embeddings of the full antibody sequence is concatenated with a local windowed-sequence module and classified by a dense head. Context-only references	facebookresearch/esm README.md Original source ↗ Reviewed profile (2026-09-16): summary at 3. Results/3.4. Performance Evaluation of Models (paragraph 4); Abstract (paragraph 1); architecture fact at Abstract (paragraph 1); 4. Discussion and Conclusions (paragraph 2); description text also read at 3. Results/3.3 Model architecture (chimeric model figure); 2. Methods (esm2_t33_650M_UR50D selection) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2b369911bb5b4b0dda914521b9475cad1656b2ac Retrieved: 2026-09-16T20:00:00.816433+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.value` Source artifact SHA-256: `8b273c21a322fc9473d1b68d0dd40c8166ab2f89e4a190aa26ca87251b97cba9` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Description Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value. Context-only references	The Accurate Prediction of Antibody Deamidations by Combining High-Throughput Automated Peptide Mapping and Protein Language Model-Based Deep Learning Original source ↗ Reviewed profile (2026-09-16): summary at 3. Results/3.4. Performance Evaluation of Models (paragraph 4); Abstract (paragraph 1); architecture fact at Abstract (paragraph 1); 4. Discussion and Conclusions (paragraph 2); description text also read at 3. Results/3.3 Model architecture (chimeric model figure); 2. Methods (esm2_t33_650M_UR50D selection) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: journal full text in PMC Retrieved: 2026-09-16T10:33:38.478Z	not individually reviewed No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `aa049f6d78e29540ba902a0d3b7f53d49e9833e4dad9869f79ac27664e8c150b` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Description Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value. Context-only references	facebookresearch/esm README.md Original source ↗ Reviewed profile (2026-09-16): summary at 3. Results/3.4. Performance Evaluation of Models (paragraph 4); Abstract (paragraph 1); architecture fact at Abstract (paragraph 1); 4. Discussion and Conclusions (paragraph 2); description text also read at 3. Results/3.3 Model architecture (chimeric model figure); 2. Methods (esm2_t33_650M_UR50D selection) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 2b369911bb5b4b0dda914521b9475cad1656b2ac Retrieved: 2026-09-16T20:00:00.816433+00:00	not individually reviewed No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `8b273c21a322fc9473d1b68d0dd40c8166ab2f89e4a190aa26ca87251b97cba9` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

2 source records and release history

The Accurate Prediction of Antibody Deamidations by Combining High-Throughput Automated Peptide Mapping and Protein Language Model-Based Deep Learning · Original source · journal full text in PMC
facebookresearch/esm README.md · Original source · 2b369911bb5b4b0dda914521b9475cad1656b2ac

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Technical metadata and extraction receipts

Stable ID: metadata-correction-85d36607a615b5d482ec

areas: proteins-complexes
field: description
previous value: Identity as reported in this paper. Unspecified versions are not assumed equivalent to other papers.
value: Chimeric antibody-deamidation predictor: a global module of ESM-2 650M embeddings of the full antibody sequence is concatenated with a local windowed-sequence module and classified by a dense head.
source locator: Reviewed profile (2026-09-16): summary at 3. Results/3.4. Performance Evaluation of Models (paragraph 4); Abstract (paragraph 1); architecture fact at Abstract (paragraph 1); 4. Discussion and Conclusions (paragraph 2); description text also read at 3. Results/3.3 Model architecture (chimeric model figure); 2. Methods (esm2_t33_650M_UR50D selection)
review: method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked all 11 scTab and MPRabc method descriptions against PMC11298532 and PMC13232518, and Lazypipe-nt, scaLR, CATHe2, DiffDock-NMDN, PC-mer and Hi-Enhancer against their papers; all match. The other pipeline descriptions are consistent with their pinned papers.; receipt: data/omics/qa-descriptions-20261011-c/review.json

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subject: ESM-2 650M embeddings + classifier

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