VESPAl: description
Description of VESPAl
Light version of VESPA that predicts single amino acid variant effects from predicted conservation and BLOSUM62 scores only, without the language-model substitution probabilities, scored in ProteinGym as a zero-shot substitution baseline.
Replace a placeholder or provenance description with a sourced functional description (issue #88a). Historical releases retain the original value.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
14 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Claimed field description Context-only references | Embeddings from protein language models predict conservation and variant effects (full text) uc20260930-source-proteingym-amfr-spearman: Benchmark CSV header (model scored in the zero-shot DMS substitution benchmark); qa-descriptions-20261010-source-vespa-full: Methods 'Supervised prediction of SAV effect scores (VESPA and VESPAl)' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Human Genetics 141:1629-1647, 2022; PMC8716573 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed field description Context-only references | ProteinGym AMFR assay-level Spearman comparison uc20260930-source-proteingym-amfr-spearman: Benchmark CSV header (model scored in the zero-shot DMS substitution benchmark); qa-descriptions-20261010-source-vespa-full: Methods 'Supervised prediction of SAV effect scores (VESPA and VESPAl)' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 144fe22b07dfaeec2b366f2346203a9838a55b4c | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Previous value Named prediction model family identified in the cited primary source. Exact fitted configurations and scores are separate records. Context-only references | Embeddings from protein language models predict conservation and variant effects (full text) uc20260930-source-proteingym-amfr-spearman: Benchmark CSV header (model scored in the zero-shot DMS substitution benchmark); qa-descriptions-20261010-source-vespa-full: Methods 'Supervised prediction of SAV effect scores (VESPA and VESPAl)' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Human Genetics 141:1629-1647, 2022; PMC8716573 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Previous value Named prediction model family identified in the cited primary source. Exact fitted configurations and scores are separate records. Context-only references | ProteinGym AMFR assay-level Spearman comparison uc20260930-source-proteingym-amfr-spearman: Benchmark CSV header (model scored in the zero-shot DMS substitution benchmark); qa-descriptions-20261010-source-vespa-full: Methods 'Supervised prediction of SAV effect scores (VESPA and VESPAl)' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 144fe22b07dfaeec2b366f2346203a9838a55b4c | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location uc20260930-source-proteingym-amfr-spearman: Benchmark CSV header (model scored in the zero-shot DMS substitution benchmark); qa-descriptions-20261010-source-vespa-full: Methods 'Supervised prediction of SAV effect scores (VESPA and VESPAl)' Context-only references | Embeddings from protein language models predict conservation and variant effects (full text) uc20260930-source-proteingym-amfr-spearman: Benchmark CSV header (model scored in the zero-shot DMS substitution benchmark); qa-descriptions-20261010-source-vespa-full: Methods 'Supervised prediction of SAV effect scores (VESPA and VESPAl)' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Human Genetics 141:1629-1647, 2022; PMC8716573 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location uc20260930-source-proteingym-amfr-spearman: Benchmark CSV header (model scored in the zero-shot DMS substitution benchmark); qa-descriptions-20261010-source-vespa-full: Methods 'Supervised prediction of SAV effect scores (VESPA and VESPAl)' Context-only references | ProteinGym AMFR assay-level Spearman comparison uc20260930-source-proteingym-amfr-spearman: Benchmark CSV header (model scored in the zero-shot DMS substitution benchmark); qa-descriptions-20261010-source-vespa-full: Methods 'Supervised prediction of SAV effect scores (VESPA and VESPAl)' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 144fe22b07dfaeec2b366f2346203a9838a55b4c | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed value Light version of VESPA that predicts single amino acid variant effects from predicted conservation and BLOSUM62 scores only, without the language-model substitution probabilities, scored in ProteinGym as a zero-shot substitution baseline. Context-only references | Embeddings from protein language models predict conservation and variant effects (full text) uc20260930-source-proteingym-amfr-spearman: Benchmark CSV header (model scored in the zero-shot DMS substitution benchmark); qa-descriptions-20261010-source-vespa-full: Methods 'Supervised prediction of SAV effect scores (VESPA and VESPAl)' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Human Genetics 141:1629-1647, 2022; PMC8716573 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed value Light version of VESPA that predicts single amino acid variant effects from predicted conservation and BLOSUM62 scores only, without the language-model substitution probabilities, scored in ProteinGym as a zero-shot substitution baseline. Context-only references | ProteinGym AMFR assay-level Spearman comparison uc20260930-source-proteingym-amfr-spearman: Benchmark CSV header (model scored in the zero-shot DMS substitution benchmark); qa-descriptions-20261010-source-vespa-full: Methods 'Supervised prediction of SAV effect scores (VESPA and VESPAl)' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 144fe22b07dfaeec2b366f2346203a9838a55b4c | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Replace a placeholder or provenance description with a sourced functional description (issue #88a). Historical releases retain the original value. Context-only references | Embeddings from protein language models predict conservation and variant effects (full text) uc20260930-source-proteingym-amfr-spearman: Benchmark CSV header (model scored in the zero-shot DMS substitution benchmark); qa-descriptions-20261010-source-vespa-full: Methods 'Supervised prediction of SAV effect scores (VESPA and VESPAl)' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Human Genetics 141:1629-1647, 2022; PMC8716573 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Replace a placeholder or provenance description with a sourced functional description (issue #88a). Historical releases retain the original value. Context-only references | ProteinGym AMFR assay-level Spearman comparison uc20260930-source-proteingym-amfr-spearman: Benchmark CSV header (model scored in the zero-shot DMS substitution benchmark); qa-descriptions-20261010-source-vespa-full: Methods 'Supervised prediction of SAV effect scores (VESPA and VESPAl)' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 144fe22b07dfaeec2b366f2346203a9838a55b4c | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
2 source records and release history
- ProteinGym AMFR assay-level Spearman comparison · Original source · 144fe22b07dfaeec2b366f2346203a9838a55b4c
- Embeddings from protein language models predict conservation and variant effects (full text) · Original source · Human Genetics 141:1629-1647, 2022; PMC8716573 full-text XML
Technical metadata and extraction receipts
Stable ID: metadata-correction-7527b96f9938e64b7b45
- areas
- proteins-complexes
- field
- description
- previous value
- Named prediction model family identified in the cited primary source. Exact fitted configurations and scores are separate records.
- value
- Light version of VESPA that predicts single amino acid variant effects from predicted conservation and BLOSUM62 scores only, without the language-model substitution probabilities, scored in ProteinGym as a zero-shot substitution baseline.
- source locator
- uc20260930-source-proteingym-amfr-spearman: Benchmark CSV header (model scored in the zero-shot DMS substitution benchmark); qa-descriptions-20261010-source-vespa-full: Methods 'Supervised prediction of SAV effect scores (VESPA and VESPAl)'
- review
- method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude research agent for issue #88a. Reviewer: separate Claude review agent, independent of the extractor; no human review claimed; date: 2026-10-10; method note: Compared the description with the cited source text (abstract, README row, benchmark CSV header or full-text section) of re-downloaded artifacts, and previous_value with origin/main.; note: Description written from the cited source text; provenance text was generic and is kept here as previous_value. Independent review 2026-10-10: every stated fact is supported by the cited text.
Related records
- subject: VESPAl