Evidence claim

Stability Oracle: description

Structure-based graph-transformer framework for identifying thermodynamically stabilising mutations, trained with thermodynamic permutations for data augmentation and structural amino-acid embeddings that represent a mutation from a single structure.

Replace a category-only description with a sourced functional description (issue #88). Historical releases retain the original value.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

7 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statement	Original source and location	Review and provenance
Claimed field description Context-only references	Stability Oracle: a structure-based graph-transformer framework for identifying stabilizing mutations Original source ↗ qa-descriptions-20261011-d-source-stability-oracle: Abstract Version: Europe PMC full-text XML for PMC11266546, Nature Communications 2024 Retrieved: 2026-10-11T01:30:46Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `8f33eefa7e621fde0fabb78775bd35ad7cd5c9f21852e91eb30f0c40c87bb657` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Previous value Protein stability-change (ddG) predictor. Context-only references	Stability Oracle: a structure-based graph-transformer framework for identifying stabilizing mutations Original source ↗ qa-descriptions-20261011-d-source-stability-oracle: Abstract Version: Europe PMC full-text XML for PMC11266546, Nature Communications 2024 Retrieved: 2026-10-11T01:30:46Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `8f33eefa7e621fde0fabb78775bd35ad7cd5c9f21852e91eb30f0c40c87bb657` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Source location qa-descriptions-20261011-d-source-stability-oracle: Abstract Context-only references	Stability Oracle: a structure-based graph-transformer framework for identifying stabilizing mutations Original source ↗ qa-descriptions-20261011-d-source-stability-oracle: Abstract Version: Europe PMC full-text XML for PMC11266546, Nature Communications 2024 Retrieved: 2026-10-11T01:30:46Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `8f33eefa7e621fde0fabb78775bd35ad7cd5c9f21852e91eb30f0c40c87bb657` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Claimed value Structure-based graph-transformer framework for identifying thermodynamically stabilising mutations, trained with thermodynamic permutations for data augmentation and structural amino-acid embeddings that represent a mutation from a single structure. Context-only references	Stability Oracle: a structure-based graph-transformer framework for identifying stabilizing mutations Original source ↗ qa-descriptions-20261011-d-source-stability-oracle: Abstract Version: Europe PMC full-text XML for PMC11266546, Nature Communications 2024 Retrieved: 2026-10-11T01:30:46Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.value` Source artifact SHA-256: `8f33eefa7e621fde0fabb78775bd35ad7cd5c9f21852e91eb30f0c40c87bb657` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Description Replace a category-only description with a sourced functional description (issue #88). Historical releases retain the original value. Context-only references	Stability Oracle: a structure-based graph-transformer framework for identifying stabilizing mutations Original source ↗ qa-descriptions-20261011-d-source-stability-oracle: Abstract Version: Europe PMC full-text XML for PMC11266546, Nature Communications 2024 Retrieved: 2026-10-11T01:30:46Z	not individually reviewed No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `8f33eefa7e621fde0fabb78775bd35ad7cd5c9f21852e91eb30f0c40c87bb657` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Relationship: subject protein-stability-20261009-method-stability-oracle Context-only references	Stability Oracle: a structure-based graph-transformer framework for identifying stabilizing mutations Original source ↗ qa-descriptions-20261011-d-source-stability-oracle: Abstract Version: Europe PMC full-text XML for PMC11266546, Nature Communications 2024 Retrieved: 2026-10-11T01:30:46Z	not individually reviewed No individual claim review recorded Audit details Field: `links:subject:protein-stability-20261009-method-stability-oracle` Source artifact SHA-256: `8f33eefa7e621fde0fabb78775bd35ad7cd5c9f21852e91eb30f0c40c87bb657` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Name Stability Oracle: description Context-only references	Stability Oracle: a structure-based graph-transformer framework for identifying stabilizing mutations Original source ↗ qa-descriptions-20261011-d-source-stability-oracle: Abstract Version: Europe PMC full-text XML for PMC11266546, Nature Communications 2024 Retrieved: 2026-10-11T01:30:46Z	not individually reviewed No individual claim review recorded Audit details Field: `name` Source artifact SHA-256: `8f33eefa7e621fde0fabb78775bd35ad7cd5c9f21852e91eb30f0c40c87bb657` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact

How to read the evidence

Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

1 source record and release history

Stability Oracle: a structure-based graph-transformer framework for identifying stabilizing mutations · Original source · Europe PMC full-text XML for PMC11266546, Nature Communications 2024

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Technical metadata and extraction receipts

Stable ID: metadata-correction-712d19498cfbbe612267

areas: proteins-complexes
contexts: research
method types: supervised_machine_learning
field: description
previous value: Protein stability-change (ddG) predictor.
value: Structure-based graph-transformer framework for identifying thermodynamically stabilising mutations, trained with thermodynamic permutations for data augmentation and structural amino-acid embeddings that represent a mutation from a single structure.
source locator: qa-descriptions-20261011-d-source-stability-oracle: Abstract
review: method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked the 16 Pancotti-derived descriptions word for word against PMC8921618 section 2.2, ESM therm, RaSP and ELASPIC-2 against Chu 2024, ThermoMPNN against Dieckhaus 2024, and ABYSSAL and phyloP against their abstracts; all match. Licences on the new sources are supported by Europe PMC, the PMC XML and Crossref.; receipt: data/omics/qa-descriptions-20261011-d/review.json

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subject: Stability Oracle

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