Evidence claim

METAGENE-1: description

Description of METAGENE-1

METAGENE-1 is an autoregressive DNA/RNA sequence model trained on wastewater metagenomic data.

Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

35 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-23-5347695500ed
Property and statement	Original source and location	Review and provenance
Claimed field description Context-only references	METAGENE-1 official resource Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-8e894fc6d180746a1808, evidence-official-f71e6c488025a4d82997, evidence-official-a6b46962aae5cfc348c6, evidence-official-b554679ea1503ce3d9f6: README.md: Model Overview and Usage; config.json; config.json: model_type, hidden_size, num_hidden_layers, num_attention_heads, vocab_size and sequence-length fields; official pretraining train/config_hub/pretrain/genomicsllama.yml: train.max_seq_length Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Not recorded Retrieved: 2026-09-16T10:50:02Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record
Claimed field description Context-only references	metagene-ai/METAGENE-1: README.md Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-8e894fc6d180746a1808, evidence-official-f71e6c488025a4d82997, evidence-official-a6b46962aae5cfc348c6, evidence-official-b554679ea1503ce3d9f6: README.md: Model Overview and Usage; config.json; config.json: model_type, hidden_size, num_hidden_layers, num_attention_heads, vocab_size and sequence-length fields; official pretraining train/config_hub/pretrain/genomicsllama.yml: train.max_seq_length Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: ad8a1e0ee62b85058bfc05d823d8e8d4759edc48 Retrieved: 2026-09-16T19:46:20.736359+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `277517aa69527fccaeb85c124f3ec9772c5508fadb5c6ad423bee39a3071ad17` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	metagene-ai/metagene-pretrain: README.md Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-8e894fc6d180746a1808, evidence-official-f71e6c488025a4d82997, evidence-official-a6b46962aae5cfc348c6, evidence-official-b554679ea1503ce3d9f6: README.md: Model Overview and Usage; config.json; config.json: model_type, hidden_size, num_hidden_layers, num_attention_heads, vocab_size and sequence-length fields; official pretraining train/config_hub/pretrain/genomicsllama.yml: train.max_seq_length Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 82b9e142db2c7e0a268346d53344d6c3bf223066 Retrieved: 2026-09-16T20:04:02.447523+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `f09b3bc7f21c19d31ad90205da47010dc73b75096c12af5b350a925b4cac5a7b` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	metagene-ai/metagene-pretrain: train/config_hub/pretrain/genomicsllama.yml Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-8e894fc6d180746a1808, evidence-official-f71e6c488025a4d82997, evidence-official-a6b46962aae5cfc348c6, evidence-official-b554679ea1503ce3d9f6: README.md: Model Overview and Usage; config.json; config.json: model_type, hidden_size, num_hidden_layers, num_attention_heads, vocab_size and sequence-length fields; official pretraining train/config_hub/pretrain/genomicsllama.yml: train.max_seq_length Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 82b9e142db2c7e0a268346d53344d6c3bf223066 Retrieved: 2026-09-16T20:04:02.447523+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `0e764482ebf7e68c4751adfcf6430acdaa67fb683f59a31b9e25f8412d8ff5ad` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Claimed field description Context-only references	metagene-ai/METAGENE-1: config.json Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-8e894fc6d180746a1808, evidence-official-f71e6c488025a4d82997, evidence-official-a6b46962aae5cfc348c6, evidence-official-b554679ea1503ce3d9f6: README.md: Model Overview and Usage; config.json; config.json: model_type, hidden_size, num_hidden_layers, num_attention_heads, vocab_size and sequence-length fields; official pretraining train/config_hub/pretrain/genomicsllama.yml: train.max_seq_length Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: ad8a1e0ee62b85058bfc05d823d8e8d4759edc48 Retrieved: 2026-09-16T19:46:20.736359+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.field` Source artifact SHA-256: `dc3751f8648b4ab24a3c0c42026267e1a2561b93249f54b460c0374e62d33f98` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	METAGENE-1 official resource Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-8e894fc6d180746a1808, evidence-official-f71e6c488025a4d82997, evidence-official-a6b46962aae5cfc348c6, evidence-official-b554679ea1503ce3d9f6: README.md: Model Overview and Usage; config.json; config.json: model_type, hidden_size, num_hidden_layers, num_attention_heads, vocab_size and sequence-length fields; official pretraining train/config_hub/pretrain/genomicsllama.yml: train.max_seq_length Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Not recorded Retrieved: 2026-09-16T10:50:02Z	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	metagene-ai/METAGENE-1: README.md Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-8e894fc6d180746a1808, evidence-official-f71e6c488025a4d82997, evidence-official-a6b46962aae5cfc348c6, evidence-official-b554679ea1503ce3d9f6: README.md: Model Overview and Usage; config.json; config.json: model_type, hidden_size, num_hidden_layers, num_attention_heads, vocab_size and sequence-length fields; official pretraining train/config_hub/pretrain/genomicsllama.yml: train.max_seq_length Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: ad8a1e0ee62b85058bfc05d823d8e8d4759edc48 Retrieved: 2026-09-16T19:46:20.736359+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `277517aa69527fccaeb85c124f3ec9772c5508fadb5c6ad423bee39a3071ad17` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	metagene-ai/metagene-pretrain: README.md Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-8e894fc6d180746a1808, evidence-official-f71e6c488025a4d82997, evidence-official-a6b46962aae5cfc348c6, evidence-official-b554679ea1503ce3d9f6: README.md: Model Overview and Usage; config.json; config.json: model_type, hidden_size, num_hidden_layers, num_attention_heads, vocab_size and sequence-length fields; official pretraining train/config_hub/pretrain/genomicsllama.yml: train.max_seq_length Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 82b9e142db2c7e0a268346d53344d6c3bf223066 Retrieved: 2026-09-16T20:04:02.447523+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `f09b3bc7f21c19d31ad90205da47010dc73b75096c12af5b350a925b4cac5a7b` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	metagene-ai/metagene-pretrain: train/config_hub/pretrain/genomicsllama.yml Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-8e894fc6d180746a1808, evidence-official-f71e6c488025a4d82997, evidence-official-a6b46962aae5cfc348c6, evidence-official-b554679ea1503ce3d9f6: README.md: Model Overview and Usage; config.json; config.json: model_type, hidden_size, num_hidden_layers, num_attention_heads, vocab_size and sequence-length fields; official pretraining train/config_hub/pretrain/genomicsllama.yml: train.max_seq_length Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 82b9e142db2c7e0a268346d53344d6c3bf223066 Retrieved: 2026-09-16T20:04:02.447523+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `0e764482ebf7e68c4751adfcf6430acdaa67fb683f59a31b9e25f8412d8ff5ad` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Previous value Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review. Context-only references	metagene-ai/METAGENE-1: config.json Original source ↗ Reviewed profile summary (2026-09-16): evidence-official-8e894fc6d180746a1808, evidence-official-f71e6c488025a4d82997, evidence-official-a6b46962aae5cfc348c6, evidence-official-b554679ea1503ce3d9f6: README.md: Model Overview and Usage; config.json; config.json: model_type, hidden_size, num_hidden_layers, num_attention_heads, vocab_size and sequence-length fields; official pretraining train/config_hub/pretrain/genomicsllama.yml: train.max_seq_length Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: ad8a1e0ee62b85058bfc05d823d8e8d4759edc48 Retrieved: 2026-09-16T19:46:20.736359+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.previous_value` Source artifact SHA-256: `dc3751f8648b4ab24a3c0c42026267e1a2561b93249f54b460c0374e62d33f98` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact

How to read the evidence

Sources and history

Release 2026-10-23-5347695500ed · Record review: source checked

5 source records and release history

METAGENE-1 official resource · Original source · Not reported
metagene-ai/METAGENE-1: README.md · Original source · ad8a1e0ee62b85058bfc05d823d8e8d4759edc48
metagene-ai/METAGENE-1: config.json · Original source · ad8a1e0ee62b85058bfc05d823d8e8d4759edc48
metagene-ai/metagene-pretrain: README.md · Original source · 82b9e142db2c7e0a268346d53344d6c3bf223066
metagene-ai/metagene-pretrain: train/config_hub/pretrain/genomicsllama.yml · Original source · 82b9e142db2c7e0a268346d53344d6c3bf223066

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Technical metadata and extraction receipts

Stable ID: metadata-correction-01fe126cd6f39ecf471a

areas: microbes-communities
method types: foundation_model
field: description
previous value: Existing candidate catalogue entry; exact checkpoint and metadata require primary-source review.
value: METAGENE-1 is an autoregressive DNA/RNA sequence model trained on wastewater metagenomic data.
source locator: Reviewed profile summary (2026-09-16): evidence-official-8e894fc6d180746a1808, evidence-official-f71e6c488025a4d82997, evidence-official-a6b46962aae5cfc348c6, evidence-official-b554679ea1503ce3d9f6: README.md: Model Overview and Usage; config.json; config.json: model_type, hidden_size, num_hidden_layers, num_attention_heads, vocab_size and sequence-length fields; official pretraining train/config_hub/pretrain/genomicsllama.yml: train.max_seq_length
review: method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked the new sources' licences against the arXiv abstract pages and Europe PMC, the 7 scFoundation pipeline descriptions against their abstracts, the language-model descriptions against their model cards and reports, and the TAPE architecture figures against the TAPE paper; all correct. The catalogue entries reuse reviewed profile summaries.; receipt: data/omics/qa-descriptions-20261011-b/review.json

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subject: METAGENE-1

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