Evidence claim

recovery_definition: gfm2-20261011-datta2026-protocol-frozen-probe

Evidence concern: excluded from comparisons

Table 1 prints the same frozen value and spread (.5252+-.0262) for NT on both 'Enhancer' and 'Enhancer Types', while the fine-tuned references differ (.548 and .424). One of the two frozen cells is likely a transcription error in the source; both are kept as printed and should not support comparison until the authors clarify.Frozen but Not Always Accessible: A Representation Analysis of Genomic Language Models · Table 1, column 'NT', rows 'Enhancer' and 'Enhancer Types'

Table 1 and Table 4 disagree for HyenaDNA Splice Acceptor: Table 1 prints .4752±.0108 (recovery 50), while Table 4 prints 0.7308 ± 0.0033 (validation-selected) and 0.7360 ± 0.0052 (diagnostic grid-best). Five other HyenaDNA cells of Table 1 equal Table 4's grid-best values, but Splice Donor (.7247±.0087) equals the validation-selected value instead. Table 3 and Table 4 also name different grid-best readouts for HyenaDNA Splice All (MLP+Mean against MLP+Attn). Table 1 values are kept as printed.Frozen but Not Always Accessible: A Representation Analysis of Genomic Language Models · Table 1, column 'HyenaDNA', rows 'Splice Acceptor' and 'Splice Donor'; Table 4; Table 3, row 'Splice All'

Recovery definition of Nucleotide Transformer benchmark under frozen-embedding probing (Datta et al. 2026 Table 1)

Recovery = (frozen probe score / fine tuned score) x 100 (Equation 7). The per-cell recovery percentages and the promoter and splice average recovery rows of Table 1 are not extracted as results; they are a ratio of the two extracted scores.

Descriptive fact transcribed from the pinned source.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

6 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statement	Original source and location	Review and provenance
Claimed field recovery_definition Context-only references	Frozen but Not Always Accessible: A Representation Analysis of Genomic Language Models Original source ↗ Section 3.2, Equation 7; Table 1 recovery positions and the 'Promoter avg. recovery' and 'Splice avg. recovery' rows Version: arXiv:2608.05329v1, submitted 2026-08-05 Retrieved: 2026-10-11T00:51:27Z	not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.field` Source artifact SHA-256: `df36e4772562329550c924004a546812c8d76149a1b5238e4d0b0cfa8a82bb5c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Source location Section 3.2, Equation 7; Table 1 recovery positions and the 'Promoter avg. recovery' and 'Splice avg. recovery' rows Context-only references	Frozen but Not Always Accessible: A Representation Analysis of Genomic Language Models Original source ↗ Section 3.2, Equation 7; Table 1 recovery positions and the 'Promoter avg. recovery' and 'Splice avg. recovery' rows Version: arXiv:2608.05329v1, submitted 2026-08-05 Retrieved: 2026-10-11T00:51:27Z	not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.source_locator` Source artifact SHA-256: `df36e4772562329550c924004a546812c8d76149a1b5238e4d0b0cfa8a82bb5c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Claimed value Recovery = (frozen probe score / fine tuned score) x 100 (Equation 7). The per-cell recovery percentages and the promoter and splice average recovery rows of Table 1 are not extracted as results; they are a ratio of the two extracted scores. Context-only references	Frozen but Not Always Accessible: A Representation Analysis of Genomic Language Models Original source ↗ Section 3.2, Equation 7; Table 1 recovery positions and the 'Promoter avg. recovery' and 'Splice avg. recovery' rows Version: arXiv:2608.05329v1, submitted 2026-08-05 Retrieved: 2026-10-11T00:51:27Z	not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.value` Source artifact SHA-256: `df36e4772562329550c924004a546812c8d76149a1b5238e4d0b0cfa8a82bb5c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Description Descriptive fact transcribed from the pinned source. Context-only references	Frozen but Not Always Accessible: A Representation Analysis of Genomic Language Models Original source ↗ Section 3.2, Equation 7; Table 1 recovery positions and the 'Promoter avg. recovery' and 'Splice avg. recovery' rows Version: arXiv:2608.05329v1, submitted 2026-08-05 Retrieved: 2026-10-11T00:51:27Z	not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `description` Source artifact SHA-256: `df36e4772562329550c924004a546812c8d76149a1b5238e4d0b0cfa8a82bb5c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Relationship: subject gfm2-20261011-datta2026-protocol-frozen-probe Context-only references	Frozen but Not Always Accessible: A Representation Analysis of Genomic Language Models Original source ↗ Section 3.2, Equation 7; Table 1 recovery positions and the 'Promoter avg. recovery' and 'Splice avg. recovery' rows Version: arXiv:2608.05329v1, submitted 2026-08-05 Retrieved: 2026-10-11T00:51:27Z	not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `links:subject:gfm2-20261011-datta2026-protocol-frozen-probe` Source artifact SHA-256: `df36e4772562329550c924004a546812c8d76149a1b5238e4d0b0cfa8a82bb5c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Name recovery_definition: gfm2-20261011-datta2026-protocol-frozen-probe Context-only references	Frozen but Not Always Accessible: A Representation Analysis of Genomic Language Models Original source ↗ Section 3.2, Equation 7; Table 1 recovery positions and the 'Promoter avg. recovery' and 'Splice avg. recovery' rows Version: arXiv:2608.05329v1, submitted 2026-08-05 Retrieved: 2026-10-11T00:51:27Z	not individually reviewed No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `name` Source artifact SHA-256: `df36e4772562329550c924004a546812c8d76149a1b5238e4d0b0cfa8a82bb5c` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

How to read the evidence

Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

1 source record and release history

Frozen but Not Always Accessible: A Representation Analysis of Genomic Language Models · Original source · arXiv:2608.05329v1, submitted 2026-08-05

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Technical metadata and extraction receipts

Stable ID: gfm2-20261011-datta2026-claim-recovery-definition

field: recovery_definition
value: Recovery = (frozen probe score / fine tuned score) x 100 (Equation 7). The per-cell recovery percentages and the promoter and splice average recovery rows of Table 1 are not extracted as results; they are a ratio of the two extracted scores.
source locator: Section 3.2, Equation 7; Table 1 recovery positions and the 'Promoter avg. recovery' and 'Splice avg. recovery' rows
review: method: source-hash-verification; pdf-text-parse; independent-cell-check; method note: Re-downloaded the arXiv PDF and matched the pinned SHA-256. Parsed Table 1 from the `pdftotext -layout` (poppler 26.08.0) text with a separate parser (review/review.py) and checked printed value, numeric value, spread, metric (Section 3.2), qualifier, unit, direction, locator and the linked configuration, protocol and dataset; recomputed each cell's printed recovery from the two scores as a transcription check.; reviewer: claude; reviewer note: Claude (Opus 5.5) review agent reviewer-gfm-a, independent of the extractor lit-gfm-2; no human review claimed; date: 2026-10-11; artifact sha256: df36e4772562329550c924004a546812c8d76149a1b5238e4d0b0cfa8a82bb5c; retrieval url: https://arxiv.org/pdf/2608.05329v1; note: Independent review 2026-10-11: matches Equation 7 and the Table 1 recovery positions.

Related records

subject: Nucleotide Transformer benchmark under frozen-embedding probing (Datta et al. 2026 Table 1)

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