Geneformer V2-316M layer 13 pre-specified as primary layer (Kendiukhov 2026)
Layer selection of Geneformer V2-316M attention edges, layer 13 (Kendiukhov 2026)
Layer 13 was pre-specified as the primary attention layer from DLPFC brain data (TRRUST recovery AUROC 0.694) before any K562 perturbation data were examined; other layers are secondary analyses.
Layer 13 was pre-specified as the primary attention layer from DLPFC brain data (TRRUST recovery AUROC 0.694) before any K562 perturbation data were examined; other layers are secondary analyses.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
6 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Claimed field layer_selection Context-only references | Systematic evaluation of single-cell foundation model interpretability: attention-derived edge scores add no incremental value over gene-level features for perturbation-target prediction (Kendiukhov 2026, BMC Genomics 27:634) Page 7, 'Perturbation-first validation reveals gene-level dominance', paragraph 2, sentence 2: 'L13 was pre-specified as the primary layer based on independent data' Version: Version of record, BMC Genomics 27:634, published 2026-07-22 (received 2026-03-10, accepted 2026-05-14) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Page 7, 'Perturbation-first validation reveals gene-level dominance', paragraph 2, sentence 2: 'L13 was pre-specified as the primary layer based on independent data' Context-only references | Systematic evaluation of single-cell foundation model interpretability: attention-derived edge scores add no incremental value over gene-level features for perturbation-target prediction (Kendiukhov 2026, BMC Genomics 27:634) Page 7, 'Perturbation-first validation reveals gene-level dominance', paragraph 2, sentence 2: 'L13 was pre-specified as the primary layer based on independent data' Version: Version of record, BMC Genomics 27:634, published 2026-07-22 (received 2026-03-10, accepted 2026-05-14) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed value Layer 13 was pre-specified as the primary attention layer from DLPFC brain data (TRRUST recovery AUROC 0.694) before any K562 perturbation data were examined; other layers are secondary analyses. Context-only references | Systematic evaluation of single-cell foundation model interpretability: attention-derived edge scores add no incremental value over gene-level features for perturbation-target prediction (Kendiukhov 2026, BMC Genomics 27:634) Page 7, 'Perturbation-first validation reveals gene-level dominance', paragraph 2, sentence 2: 'L13 was pre-specified as the primary layer based on independent data' Version: Version of record, BMC Genomics 27:634, published 2026-07-22 (received 2026-03-10, accepted 2026-05-14) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Layer 13 was pre-specified as the primary attention layer from DLPFC brain data (TRRUST recovery AUROC 0.694) before any K562 perturbation data were examined; other layers are secondary analyses. Context-only references | Systematic evaluation of single-cell foundation model interpretability: attention-derived edge scores add no incremental value over gene-level features for perturbation-target prediction (Kendiukhov 2026, BMC Genomics 27:634) Page 7, 'Perturbation-first validation reveals gene-level dominance', paragraph 2, sentence 2: 'L13 was pre-specified as the primary layer based on independent data' Version: Version of record, BMC Genomics 27:634, published 2026-07-22 (received 2026-03-10, accepted 2026-05-14) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: subject gfm-guides-20261014-kendiukhov2026-config-geneformer-v2-316m-attention-l13 Context-only references | Systematic evaluation of single-cell foundation model interpretability: attention-derived edge scores add no incremental value over gene-level features for perturbation-target prediction (Kendiukhov 2026, BMC Genomics 27:634) Page 7, 'Perturbation-first validation reveals gene-level dominance', paragraph 2, sentence 2: 'L13 was pre-specified as the primary layer based on independent data' Version: Version of record, BMC Genomics 27:634, published 2026-07-22 (received 2026-03-10, accepted 2026-05-14) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Name Geneformer V2-316M layer 13 pre-specified as primary layer (Kendiukhov 2026) Context-only references | Systematic evaluation of single-cell foundation model interpretability: attention-derived edge scores add no incremental value over gene-level features for perturbation-target prediction (Kendiukhov 2026, BMC Genomics 27:634) Page 7, 'Perturbation-first validation reveals gene-level dominance', paragraph 2, sentence 2: 'L13 was pre-specified as the primary layer based on independent data' Version: Version of record, BMC Genomics 27:634, published 2026-07-22 (received 2026-03-10, accepted 2026-05-14) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
1 source record and release history
- Systematic evaluation of single-cell foundation model interpretability: attention-derived edge scores add no incremental value over gene-level features for perturbation-target prediction (Kendiukhov 2026, BMC Genomics 27:634) · Original source · Version of record, BMC Genomics 27:634, published 2026-07-22 (received 2026-03-10, accepted 2026-05-14)
Technical metadata and extraction receipts
Stable ID: gfm-guides-20261014-kendiukhov2026-claim-l13-prespecified
- field
- layer_selection
- value
- Layer 13 was pre-specified as the primary attention layer from DLPFC brain data (TRRUST recovery AUROC 0.694) before any K562 perturbation data were examined; other layers are secondary analyses.
- source locator
- Page 7, 'Perturbation-first validation reveals gene-level dominance', paragraph 2, sentence 2: 'L13 was pre-specified as the primary layer based on independent data'
- review
- method: source-hash-verification; pdf-text-parse; method note: Sentence re-read on page 7 of the archived PDF.; reviewer: claude; reviewer note: Claude (Opus 5.5) research agent, independent of the extractor; no human review claimed; date: 2026-10-14; artifact sha256: 4c1699cb964ae588117a6737f5e9e189eb9a5ef5ff78568d2a99e7a13d6608fe; retrieval url: https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/s12864-026-12965-8.pdf; note: Independent review 2026-10-14: matched.