Pancreas (16k): overlap with Geneformer pretraining (Kedzierska et al. 2025)
Pretraining overlap:Geneformer of Pancreas (16k) (Kedzierska et al. 2025)
The Pancreas study GSE84133 (Baron et al.) was included in Geneformer pretraining; the other five Pancreas studies were not.
The Pancreas study GSE84133 (Baron et al.) was included in Geneformer pretraining; the other five Pancreas studies were not.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
12 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Claimed field pretraining_overlap:Geneformer Context-only references | Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) Additional file 1, sheet 'TableS2' cell G6 (column 'Geneformer', row 'GEO - GSE84133'); page 9 'Datasets' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2025_3574_MOESM1_ESM.xlsx) of the version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed field pretraining_overlap:Geneformer Context-only references | Zero-shot evaluation reveals limitations of single-cell foundation models (Kedzierska et al. 2025, Genome Biology 26:101) Additional file 1, sheet 'TableS2' cell G6 (column 'Geneformer', row 'GEO - GSE84133'); page 9 'Datasets' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, Genome Biology 26:101, published 2025-04-18 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Additional file 1, sheet 'TableS2' cell G6 (column 'Geneformer', row 'GEO - GSE84133'); page 9 'Datasets' Context-only references | Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) Additional file 1, sheet 'TableS2' cell G6 (column 'Geneformer', row 'GEO - GSE84133'); page 9 'Datasets' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2025_3574_MOESM1_ESM.xlsx) of the version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Additional file 1, sheet 'TableS2' cell G6 (column 'Geneformer', row 'GEO - GSE84133'); page 9 'Datasets' Context-only references | Zero-shot evaluation reveals limitations of single-cell foundation models (Kedzierska et al. 2025, Genome Biology 26:101) Additional file 1, sheet 'TableS2' cell G6 (column 'Geneformer', row 'GEO - GSE84133'); page 9 'Datasets' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, Genome Biology 26:101, published 2025-04-18 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed value The Pancreas study GSE84133 (Baron et al.) was included in Geneformer pretraining; the other five Pancreas studies were not. Context-only references | Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) Additional file 1, sheet 'TableS2' cell G6 (column 'Geneformer', row 'GEO - GSE84133'); page 9 'Datasets' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2025_3574_MOESM1_ESM.xlsx) of the version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed value The Pancreas study GSE84133 (Baron et al.) was included in Geneformer pretraining; the other five Pancreas studies were not. Context-only references | Zero-shot evaluation reveals limitations of single-cell foundation models (Kedzierska et al. 2025, Genome Biology 26:101) Additional file 1, sheet 'TableS2' cell G6 (column 'Geneformer', row 'GEO - GSE84133'); page 9 'Datasets' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, Genome Biology 26:101, published 2025-04-18 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description The Pancreas study GSE84133 (Baron et al.) was included in Geneformer pretraining; the other five Pancreas studies were not. Context-only references | Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) Additional file 1, sheet 'TableS2' cell G6 (column 'Geneformer', row 'GEO - GSE84133'); page 9 'Datasets' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2025_3574_MOESM1_ESM.xlsx) of the version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description The Pancreas study GSE84133 (Baron et al.) was included in Geneformer pretraining; the other five Pancreas studies were not. Context-only references | Zero-shot evaluation reveals limitations of single-cell foundation models (Kedzierska et al. 2025, Genome Biology 26:101) Additional file 1, sheet 'TableS2' cell G6 (column 'Geneformer', row 'GEO - GSE84133'); page 9 'Datasets' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, Genome Biology 26:101, published 2025-04-18 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: subject gfm-guides-20261014-kedzierska2025-data-pancreas-16k Context-only references | Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) Additional file 1, sheet 'TableS2' cell G6 (column 'Geneformer', row 'GEO - GSE84133'); page 9 'Datasets' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Additional file 1 (13059_2025_3574_MOESM1_ESM.xlsx) of the version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: subject gfm-guides-20261014-kedzierska2025-data-pancreas-16k Context-only references | Zero-shot evaluation reveals limitations of single-cell foundation models (Kedzierska et al. 2025, Genome Biology 26:101) Additional file 1, sheet 'TableS2' cell G6 (column 'Geneformer', row 'GEO - GSE84133'); page 9 'Datasets' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, Genome Biology 26:101, published 2025-04-18 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-10-23-5347695500ed · Record review: source checked
2 source records and release history
- Zero-shot evaluation reveals limitations of single-cell foundation models (Kedzierska et al. 2025, Genome Biology 26:101) · Original source · Version of record, Genome Biology 26:101, published 2025-04-18
- Kedzierska et al. 2025, Additional file 1 (Supplementary Tables S1-S7, xlsx) · Original source · Additional file 1 (13059_2025_3574_MOESM1_ESM.xlsx) of the version of record
Technical metadata and extraction receipts
Stable ID: gfm-guides-20261014-kedzierska2025-pancreas-16k-claim-geneformer-pretraining-overlap
- field
- pretraining_overlap:Geneformer
- value
- The Pancreas study GSE84133 (Baron et al.) was included in Geneformer pretraining; the other five Pancreas studies were not.
- source locator
- Additional file 1, sheet 'TableS2' cell G6 (column 'Geneformer', row 'GEO - GSE84133'); page 9 'Datasets'
- review
- method: source-hash-verification; independent-cell-check; method note: TableS2 cells re-read with openpyxl from the re-downloaded workbook; Methods page 9 re-read.; reviewer: claude; reviewer note: Claude (Opus 5.5) research agent, independent of the extractor; no human review claimed; date: 2026-10-14; artifact sha256: 7adee1211206c4071981a402617c293048baeeeaf415b68ecd13383678003b5e; retrieval url: https://static-content.springer.com/esm/art%3A10.1186%2Fs13059-025-03574-x/MediaObjects/13059_2025_3574_MOESM1_ESM.xlsx; note: Independent review 2026-10-14: matched.