reported_finding: feng-dna-fm-20261013-protocol-gtex-wb-expression-6kb
Reported finding of Feng GTEx whole-blood expression prediction, all genes, 6 kb input
Average Pearson correlation between predicted and observed expression was 0.114 to 0.123 across the 6 kb models; the authors read this as limited information for predicting subject-specific tissue-level expression. Caduceus-Ph and HyenaDNA had the highest average correlations and significantly outperformed DNABERT-2 and GROVER (paired Wilcoxon signed-rank). A subset of genes reached correlations above 0.4 and up to 0.9.
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6 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Claimed field reported_finding Context-only references | Benchmarking DNA foundation models for genomic and genetic tasks Results, 'Gene expression prediction', paragraphs 2 and 3; Methods, 'Gene expression prediction benchmark' (Wilcoxon test) Version: PMC12663285.1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Source location Results, 'Gene expression prediction', paragraphs 2 and 3; Methods, 'Gene expression prediction benchmark' (Wilcoxon test) Context-only references | Benchmarking DNA foundation models for genomic and genetic tasks Results, 'Gene expression prediction', paragraphs 2 and 3; Methods, 'Gene expression prediction benchmark' (Wilcoxon test) Version: PMC12663285.1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Claimed value Average Pearson correlation between predicted and observed expression was 0.114 to 0.123 across the 6 kb models; the authors read this as limited information for predicting subject-specific tissue-level expression. Caduceus-Ph and HyenaDNA had the highest average correlations and significantly outperformed DNABERT-2 and GROVER (paired Wilcoxon signed-rank). A subset of genes reached correlations above 0.4 and up to 0.9. Context-only references | Benchmarking DNA foundation models for genomic and genetic tasks Results, 'Gene expression prediction', paragraphs 2 and 3; Methods, 'Gene expression prediction benchmark' (Wilcoxon test) Version: PMC12663285.1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Description Descriptive fact transcribed from the pinned source. Context-only references | Benchmarking DNA foundation models for genomic and genetic tasks Results, 'Gene expression prediction', paragraphs 2 and 3; Methods, 'Gene expression prediction benchmark' (Wilcoxon test) Version: PMC12663285.1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: subject feng-dna-fm-20261013-protocol-gtex-wb-expression-6kb Context-only references | Benchmarking DNA foundation models for genomic and genetic tasks Results, 'Gene expression prediction', paragraphs 2 and 3; Methods, 'Gene expression prediction benchmark' (Wilcoxon test) Version: PMC12663285.1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Name reported_finding: feng-dna-fm-20261013-protocol-gtex-wb-expression-6kb Context-only references | Benchmarking DNA foundation models for genomic and genetic tasks Results, 'Gene expression prediction', paragraphs 2 and 3; Methods, 'Gene expression prediction benchmark' (Wilcoxon test) Version: PMC12663285.1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
1 source record and release history
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Stable ID: feng-dna-fm-20261013-claim-gtex-short-finding
- field
- reported_finding
- value
- Average Pearson correlation between predicted and observed expression was 0.114 to 0.123 across the 6 kb models; the authors read this as limited information for predicting subject-specific tissue-level expression. Caduceus-Ph and HyenaDNA had the highest average correlations and significantly outperformed DNABERT-2 and GROVER (paired Wilcoxon signed-rank). A subset of genes reached correlations above 0.4 and up to 0.9.
- source locator
- Results, 'Gene expression prediction', paragraphs 2 and 3; Methods, 'Gene expression prediction benchmark' (Wilcoxon test)
- review
- method: source-hash-verification; ai-assisted-source-review; method note: Checked against Results, 'Gene expression prediction', paragraphs 2 and 3, and the Wilcoxon test in Methods.; reviewer: claude; reviewer note: Independent Claude (Opus 5.5) review agent, separate from the extraction agent feng-19 that built this batch. Automated review only; no human review claimed. Transcription, not reproduction.; reviewed at: 2026-10-13T14:40:00Z; artifact sha256: 5d8ca9bcf88cc1b38ad667906a2e4699b1aefa6d31c6f49259784930353f3202; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12663285/fullTextXML; note: Hand transcription by the extraction agent, written out by extract/extract_feng.py. Independent review: wording matches the cited text; nothing added that the source does not say.