reported_finding: feng-dna-fm-20261013-protocol-gtex-wb-expression-long-768
Reported finding of Feng GTEx whole-blood expression prediction, 768 genes, long input
Among long-input models, HyenaDNA-450K was significantly better than Enformer (p < 0.01) and Enformer was similar to Caduceus-Ph. On the same 768 genes, extending the input improved HyenaDNA (average correlation 0.122 short versus 0.137 long, two-sided Wilcoxon p = 0.0005) but not Caduceus-Ph (0.124 versus 0.127, p = 0.975).
Descriptive fact transcribed from the pinned source.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
12 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Claimed field reported_finding Context-only references | Benchmarking DNA foundation models for genomic and genetic tasks Results, 'Gene expression prediction', paragraph 2; Supplementary Table 4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC12663285.1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Claimed field reported_finding Context-only references | Benchmarking DNA foundation models for genomic and genetic tasks: Supplementary Information Results, 'Gene expression prediction', paragraph 2; Supplementary Table 4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature Communications 16, 10780 (2025); Supplementary Information PDF (MOESM1, 11 pages) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Results, 'Gene expression prediction', paragraph 2; Supplementary Table 4 Context-only references | Benchmarking DNA foundation models for genomic and genetic tasks Results, 'Gene expression prediction', paragraph 2; Supplementary Table 4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC12663285.1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Source location Results, 'Gene expression prediction', paragraph 2; Supplementary Table 4 Context-only references | Benchmarking DNA foundation models for genomic and genetic tasks: Supplementary Information Results, 'Gene expression prediction', paragraph 2; Supplementary Table 4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature Communications 16, 10780 (2025); Supplementary Information PDF (MOESM1, 11 pages) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed value Among long-input models, HyenaDNA-450K was significantly better than Enformer (p < 0.01) and Enformer was similar to Caduceus-Ph. On the same 768 genes, extending the input improved HyenaDNA (average correlation 0.122 short versus 0.137 long, two-sided Wilcoxon p = 0.0005) but not Caduceus-Ph (0.124 versus 0.127, p = 0.975). Context-only references | Benchmarking DNA foundation models for genomic and genetic tasks Results, 'Gene expression prediction', paragraph 2; Supplementary Table 4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC12663285.1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Claimed value Among long-input models, HyenaDNA-450K was significantly better than Enformer (p < 0.01) and Enformer was similar to Caduceus-Ph. On the same 768 genes, extending the input improved HyenaDNA (average correlation 0.122 short versus 0.137 long, two-sided Wilcoxon p = 0.0005) but not Caduceus-Ph (0.124 versus 0.127, p = 0.975). Context-only references | Benchmarking DNA foundation models for genomic and genetic tasks: Supplementary Information Results, 'Gene expression prediction', paragraph 2; Supplementary Table 4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature Communications 16, 10780 (2025); Supplementary Information PDF (MOESM1, 11 pages) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Descriptive fact transcribed from the pinned source. Context-only references | Benchmarking DNA foundation models for genomic and genetic tasks Results, 'Gene expression prediction', paragraph 2; Supplementary Table 4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC12663285.1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Description Descriptive fact transcribed from the pinned source. Context-only references | Benchmarking DNA foundation models for genomic and genetic tasks: Supplementary Information Results, 'Gene expression prediction', paragraph 2; Supplementary Table 4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature Communications 16, 10780 (2025); Supplementary Information PDF (MOESM1, 11 pages) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: subject feng-dna-fm-20261013-protocol-gtex-wb-expression-long-768 Context-only references | Benchmarking DNA foundation models for genomic and genetic tasks Results, 'Gene expression prediction', paragraph 2; Supplementary Table 4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: PMC12663285.1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: subject feng-dna-fm-20261013-protocol-gtex-wb-expression-long-768 Context-only references | Benchmarking DNA foundation models for genomic and genetic tasks: Supplementary Information Results, 'Gene expression prediction', paragraph 2; Supplementary Table 4 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature Communications 16, 10780 (2025); Supplementary Information PDF (MOESM1, 11 pages) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
2 source records and release history
- Benchmarking DNA foundation models for genomic and genetic tasks · Original source · PMC12663285.1
- Benchmarking DNA foundation models for genomic and genetic tasks: Supplementary Information · Original source · Nature Communications 16, 10780 (2025); Supplementary Information PDF (MOESM1, 11 pages)
Technical metadata and extraction receipts
Stable ID: feng-dna-fm-20261013-claim-gtex-long-finding
- field
- reported_finding
- value
- Among long-input models, HyenaDNA-450K was significantly better than Enformer (p < 0.01) and Enformer was similar to Caduceus-Ph. On the same 768 genes, extending the input improved HyenaDNA (average correlation 0.122 short versus 0.137 long, two-sided Wilcoxon p = 0.0005) but not Caduceus-Ph (0.124 versus 0.127, p = 0.975).
- source locator
- Results, 'Gene expression prediction', paragraph 2; Supplementary Table 4
- review
- method: source-hash-verification; ai-assisted-source-review; rendered-source-visual-check; method note: Checked against Results, 'Gene expression prediction', paragraph 2, and Supplementary Table 4 (PDF page 7).; reviewer: claude; reviewer note: Independent Claude (Opus 5.5) review agent, separate from the extraction agent feng-19 that built this batch. Automated review only; no human review claimed. Transcription, not reproduction.; reviewed at: 2026-10-13T14:40:00Z; artifact sha256: 5d8ca9bcf88cc1b38ad667906a2e4699b1aefa6d31c6f49259784930353f3202; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12663285/fullTextXML; note: Hand transcription by the extraction agent, written out by extract/extract_feng.py. Independent review: wording matches the cited text; nothing added that the source does not say.