species_absent_from_reference_databases: dna-pathogen-20261009-data-portik2022-hifi-zymo-d6331
Descriptive fact transcribed from the pinned source.
Evidence
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Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
6 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.field species_absent_from_reference_databases Context-only references | Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Methods 'Detection metrics' paragraph 4; Table 4 footnote Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator Methods 'Detection metrics' paragraph 4; Table 4 footnote Context-only references | Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Methods 'Detection metrics' paragraph 4; Table 4 footnote Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.value Sequences or taxonomy for Veillonella rogosae and Prevotella corporis were lacking from several reference databases (PlusPF, RefSeq ABVF, MiniSeq + H, NCBI nt), so both were excluded from species-level detection metrics for all methods; many of their reads were assigned to other species of the same genera. Context-only references | Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Methods 'Detection metrics' paragraph 4; Table 4 footnote Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description Descriptive fact transcribed from the pinned source. Context-only references | Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Methods 'Detection metrics' paragraph 4; Table 4 footnote Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: subject dna-pathogen-20261009-data-portik2022-hifi-zymo-d6331 Context-only references | Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Methods 'Detection metrics' paragraph 4; Table 4 footnote Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| name species_absent_from_reference_databases: dna-pathogen-20261009-data-portik2022-hifi-zymo-d6331 Context-only references | Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets Methods 'Detection metrics' paragraph 4; Table 4 footnote Version: BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-10-09-ba02f2f4a36e · Record review: source checked
1 source records and release history
- Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets · Original source · BMC Bioinformatics 23:541, published 2022-12-13; PMC9749362 full-text XML
Technical metadata and extraction receipts
Stable ID: dna-pathogen-20261009-claim-portik2022-missing-reference-species
- field
- species_absent_from_reference_databases
- value
- Sequences or taxonomy for Veillonella rogosae and Prevotella corporis were lacking from several reference databases (PlusPF, RefSeq ABVF, MiniSeq + H, NCBI nt), so both were excluded from species-level detection metrics for all methods; many of their reads were assigned to other species of the same genera.
- source locator
- Methods 'Detection metrics' paragraph 4; Table 4 footnote
- review
- method: source-hash-verification; ai-assisted-source-review; reviewer: claude; reviewer note: Separate Claude review agent, independent of the extractor; no human review claimed; date: 2026-10-09; artifact sha256: 42cf6834ec87e149752176a65247f3aab9873f7b215037a195175a8a3113c1fe; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC9749362/fullTextXML; method note: Compared the claim text with the cited paragraphs and table cells of the re-downloaded article XML.; note: Transcribed from the pinned article XML text. Pending independent review. Independent review 2026-10-09: wording matches the cited locator.