AlphaGenome Atlas values not extracted
Extraction gap of AlphaGenome Atlas: in silico mutagenesis of the entire human genome (Cheng, Taylor, Nicolaisen et al., medRxiv 2026)
Not extracted: Fig. 2A and 2B bar labels other than those the text names (bars sorted by value and identified only by colour, so ClinVar SNV and indel overall AUPRCs and most comparator values are unattributed); fig. S7A ClinVar UTR, intronic and ncVar SNV-plus-indel bars (same problem); Fig. 2D and fig. S7D per-gene Spearman correlations (no printed values); fig. S7E and S7F precision at 90% recall (no printed values); Fig. 3A curve labels at K other than 50 (attributed by colour); TraitGym Complex comparator value 0.27 (the text does not name the method); all 95% bootstrap confidence intervals (drawn, not printed).
Descriptive fact transcribed from the pinned source.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
6 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Claimed field extraction_gap Context-only references | AlphaGenome Atlas: in silico mutagenesis of the entire human genome (Cheng, Taylor, Nicolaisen et al., medRxiv 2026) Fig. 2 (page 6), Fig. 3A (page 9), fig. S7 (page 57) Version: medRxiv preprint version 1, posted 2026-09-20; full-text PDF with supplementary figures and tables (83 pages) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the medRxiv PDF. A second retrieval at 2026-10-19T12:30:54Z had the same length (15,415,633 bytes) and the same SHA-256. |
| Source location Fig. 2 (page 6), Fig. 3A (page 9), fig. S7 (page 57) Context-only references | AlphaGenome Atlas: in silico mutagenesis of the entire human genome (Cheng, Taylor, Nicolaisen et al., medRxiv 2026) Fig. 2 (page 6), Fig. 3A (page 9), fig. S7 (page 57) Version: medRxiv preprint version 1, posted 2026-09-20; full-text PDF with supplementary figures and tables (83 pages) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the medRxiv PDF. A second retrieval at 2026-10-19T12:30:54Z had the same length (15,415,633 bytes) and the same SHA-256. |
| Claimed value Not extracted: Fig. 2A and 2B bar labels other than those the text names (bars sorted by value and identified only by colour, so ClinVar SNV and indel overall AUPRCs and most comparator values are unattributed); fig. S7A ClinVar UTR, intronic and ncVar SNV-plus-indel bars (same problem); Fig. 2D and fig. S7D per-gene Spearman correlations (no printed values); fig. S7E and S7F precision at 90% recall (no printed values); Fig. 3A curve labels at K other than 50 (attributed by colour); TraitGym Complex comparator value 0.27 (the text does not name the method); all 95% bootstrap confidence intervals (drawn, not printed). Context-only references | AlphaGenome Atlas: in silico mutagenesis of the entire human genome (Cheng, Taylor, Nicolaisen et al., medRxiv 2026) Fig. 2 (page 6), Fig. 3A (page 9), fig. S7 (page 57) Version: medRxiv preprint version 1, posted 2026-09-20; full-text PDF with supplementary figures and tables (83 pages) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the medRxiv PDF. A second retrieval at 2026-10-19T12:30:54Z had the same length (15,415,633 bytes) and the same SHA-256. |
| Description Descriptive fact transcribed from the pinned source. Context-only references | AlphaGenome Atlas: in silico mutagenesis of the entire human genome (Cheng, Taylor, Nicolaisen et al., medRxiv 2026) Fig. 2 (page 6), Fig. 3A (page 9), fig. S7 (page 57) Version: medRxiv preprint version 1, posted 2026-09-20; full-text PDF with supplementary figures and tables (83 pages) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the medRxiv PDF. A second retrieval at 2026-10-19T12:30:54Z had the same length (15,415,633 bytes) and the same SHA-256. |
| Relationship: subject ag-atlas-20261019-source-preprint Context-only references | AlphaGenome Atlas: in silico mutagenesis of the entire human genome (Cheng, Taylor, Nicolaisen et al., medRxiv 2026) Fig. 2 (page 6), Fig. 3A (page 9), fig. S7 (page 57) Version: medRxiv preprint version 1, posted 2026-09-20; full-text PDF with supplementary figures and tables (83 pages) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the medRxiv PDF. A second retrieval at 2026-10-19T12:30:54Z had the same length (15,415,633 bytes) and the same SHA-256. |
| Name AlphaGenome Atlas values not extracted Context-only references | AlphaGenome Atlas: in silico mutagenesis of the entire human genome (Cheng, Taylor, Nicolaisen et al., medRxiv 2026) Fig. 2 (page 6), Fig. 3A (page 9), fig. S7 (page 57) Version: medRxiv preprint version 1, posted 2026-09-20; full-text PDF with supplementary figures and tables (83 pages) | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the medRxiv PDF. A second retrieval at 2026-10-19T12:30:54Z had the same length (15,415,633 bytes) and the same SHA-256. |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
1 source record and release history
- AlphaGenome Atlas: in silico mutagenesis of the entire human genome (Cheng, Taylor, Nicolaisen et al., medRxiv 2026) · Original source · medRxiv preprint version 1, posted 2026-09-20; full-text PDF with supplementary figures and tables (83 pages)
Technical metadata and extraction receipts
Stable ID: ag-atlas-20261019-claim-figures-not-extracted
- field
- extraction_gap
- value
- Not extracted: Fig. 2A and 2B bar labels other than those the text names (bars sorted by value and identified only by colour, so ClinVar SNV and indel overall AUPRCs and most comparator values are unattributed); fig. S7A ClinVar UTR, intronic and ncVar SNV-plus-indel bars (same problem); Fig. 2D and fig. S7D per-gene Spearman correlations (no printed values); fig. S7E and S7F precision at 90% recall (no printed values); Fig. 3A curve labels at K other than 50 (attributed by colour); TraitGym Complex comparator value 0.27 (the text does not name the method); all 95% bootstrap confidence intervals (drawn, not printed).
- source locator
- Fig. 2 (page 6), Fig. 3A (page 9), fig. S7 (page 57)
- review
- method: source-hash-verification; automated-source-review; scope-review; method note: Scope decision recorded by the extractor.; reviewer: claude; reviewer note: Independent Claude review agent for PR #214, 2026-11-01; did not extract this batch; no human review claimed.; date: 2026-11-01; artifact sha256: b32d1539005ca4ea31c3dcef49b834424b1d8b5da4ce6b9fc3e1f942d39fc453; retrieval url: https://www.medrxiv.org/content/10.64898/2026.09.16.26363192v1.full.pdf; note: Checked the claim's statements against the cited pages of a 2026-11-01 retrieval. The 2026-11-01 retrieval is stamped differently from the pinned bytes (different SHA-256); re-running the extractor on it, with only the hash assertion relaxed, reproduced batch.jsonl byte for byte. Verdict in docs/reviews/2026-11-01-alphagenome-atlas-lu-brandes.md.