rewirebio.iobenchmarks
Evidence and investigation

Contested results

Where one study disagrees with what other studies report for the same models, and what we are doing to resolve each case.

These are automatic leads, not findings of error. Each release, a check compares how every study ranks the models it shares with other studies. It flags a study that reverses the order the others agree on, or whose gap to a shared reference model lies well outside theirs. Different tasks, populations or metrics often explain a flag.

A flag never hides a result. Flagged results stay in every table, page and download, marked Contested. A result is withheld only when a reviewer marks it disputed.

How the check works, and how each follow-up is recorded: discrepancies between studies.

In this release

  • 220open
  • 0settled
  • 1resolved
  • 1high severity
  • 12medium severity
  • 208low severity

Release 2026-10-23-5347695500ed · 221 findings in all · rules version 3

Findings

Status: All · Open · Settled · Resolved

Severity: All · High · Medium · Low

State: All · Not yet reviewed · Confirmed error

Showing findings that compare DNABERT-2. All models

1 finding matches, most severe first.

DNABERT-2 and RNA-FM: mRNABench: A curated benchmark for mature mRNA property and function prediction reverses the order

  • Medium severity
  • Not yet reviewed
  • Ordering reversal
  • Different tasks across studies

mRNABench: A curated benchmark for mature mRNA property and function prediction ranks DNABERT-2 above RNA-FM in 7 of 7 comparisons; other studies rank RNA-FM above DNABERT-2 in 30 of 30.

2 papers rank RNA-FM above DNABERT-2 in all 30 comparisons that are not ties (4 are ties). MRNABench ranks DNABERT-2 above RNA-FM in all 7 comparisons that are not ties (3 are ties).

Comparisons in which each paper scores RNA-FM or DNABERT-2 higher2 other papers: RNA-FM higher in 30, DNABERT-2 higher in 0, 4 ties. mRNABench (disagrees): RNA-FM higher in 0, DNABERT-2 higher in 7, 3 ties.2 other papers30 RNA-FM higher304 tie4Disagrees: mRNABenchmRNABench: A curated benchmark for mature mRNA property and function prediction3 tie37 DNABERT-2 higher7
RNA-FM higherTieDNABERT-2 higher
Compared
DNABERT-2, RNA-FM

Not reviewed yet.