Where one study disagrees with what other studies report for the same models, and what we are doing to resolve each case.
These are automatic leads, not findings of error. Each release, a check compares how every study ranks the models it shares with other studies. It flags a study that reverses the order the others agree on, or whose gap to a shared reference model lies well outside theirs. Different tasks, populations or metrics often explain a flag.
A flag never hides a result. Flagged results stay in every table, page and download, marked Contested. A result is withheld only when a reviewer marks it disputed.
Livesey and Marsh 2025, Genome Biology 26:104 (Europe PMC full text XML) ranks ESM-1b above MutPred in 6 of 7 comparisons; 2 of 2 other studies rank MutPred above ESM-1b.
3 papers rank MutPred above ESM-1b in 8 of their 11 comparisons and ESM-1b higher in 1; 2 are ties. Of those papers, ProteinGym ranks ESM-1b higher on its own (1 of 1). Livesey and Marsh 2025 ranks ESM-1b above MutPred in 6 of its 7 comparisons and MutPred higher in 1.
Livesey and Marsh 2025, Genome Biology 26:104 (Europe PMC full text XML) ranks MutFormer above MutPred in 6 of 7 comparisons; An openly licensed benchmark and per-gene calibration map for missense pathogenicity predictors on activating cancer drivers ranks MutPred above MutFormer in 6 of 6 comparisons. No other study gives a verdict, so neither is the outlier.
2 papers rank MutFormer above MutPred in 6 of their 13 comparisons and MutPred higher in 7. Of those papers, An openly licensed benchmark… ranks MutPred higher on its own (6 of 6).