0.369 dockq
fromm2026-af3-ptm dockq
- Tested configuration
- AlphaFold3, 200 models per target, top model picked by AlphaFold3 pTM (Fromm et al. 2026)
- Protocol
- Picking the top AlphaFold3 model per antibody-antigen target with a confidence score
- Dataset
- Fromm et al. 2026 antibody-antigen benchmark: 110 complexes released after 30 September 2021
- Procedure
- structural-20261009-protocol-fromm2026-abag-model-selection
- Evaluation
- AlphaFold3 top model by pTM on 110 post-cutoff antibody-antigen complexes (Fromm et al. 2026)
- Coverage
- 110 scored / Not reported eligible
- Uncertainty
- Not reported by the source
- Evidence
- Independent external evaluation · source checkedEvaluating deep learning based structure prediction methods on antibody-antigen complexes · Table 1, row 'pTM', column '<DockQ>'
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.
Reproduction
- Split
- Temporal split at the AlphaFold3 training cutoff
- Adaptation
- None; selection among sampled models
- Scoring implementation
- DockQ (Basu and Wallner 2016; Mirabello and Wallner 2024)
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 0.369 Individual claims | Evaluating deep learning based structure prediction methods on antibody-antigen complexes Table 1, row 'pTM', column '<DockQ>' Version: Bioinformatics 42(4):btag136, 2026; PMC13061134 full-text XML | source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-09 independent paper Audit detailsExtracted by deterministic parse of JATS Table 1 (table-wrap btag136-T1), asserting the caption, the header, the nine row labels and three values of the form d.ddd per row. Independent review 2026-10-09: value and identity match the source. Field: Source artifact SHA-256: Hash scope: JATS XML parse (xml.etree), by extract/extract_structural.py Extraction artifact SHA-256: |
Sources and history
Release 2026-10-10-6e93f504adfc · Record review: source checked
1 source records and release history
- Evaluating deep learning based structure prediction methods on antibody-antigen complexes · Original source · Bioinformatics 42(4):btag136, 2026; PMC13061134 full-text XML
Technical metadata and extraction receipts
Stable ID: structural-20261009-result-fromm2026-af3-ptm-mean-dockq
- metric
- dockq
- metric qualifier
- mean over targets of the DockQ of the model picked by this score
- metric direction
- higher
- unit
- unitless
- printed value
- 0.369
- numeric value
- 0.369
- source locator
- Table 1, row 'pTM', column '<DockQ>'
- review
- method: source-hash-verification; deterministic-table-parse; independent-cell-check; method note: Re-downloaded the article XML and matched its SHA-256. Read Table 1 with a separate parser and checked printed value, numeric value, metric, qualifier, unit, direction and the linked configuration and protocol against the row and column headers.; reviewer: claude; reviewer note: Separate Claude review agent, independent of the extractor; no human review claimed; date: 2026-10-09; artifact sha256: a7320667ed6f7d8df440d90275d976b91d2fe98411172a79c6a304eb3f02275d; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13061134/fullTextXML; note: Extracted by deterministic parse of JATS Table 1 (table-wrap btag136-T1), asserting the caption, the header, the nine row labels and three values of the form d.ddd per row. Independent review 2026-10-09: value and identity match the source.
- missing metadata
- uncertainty: reason: unreported
- scored count
- 110