Result

0.562 spearman-correlation

fromm2026-af3-aeitm-oracle spearman-correlation

Tested configuration: AlphaFold3, 200 models per target, top model picked by aeiTM: ipTM recomputed from true aligned errors (oracle) (Fromm et al. 2026)
Protocol: Picking the top AlphaFold3 model per antibody-antigen target with a confidence score
Dataset: Fromm et al. 2026 antibody-antigen benchmark: 110 complexes released after 30 September 2021
Procedure: structural-20261009-protocol-fromm2026-abag-model-selection
Evaluation: AlphaFold3 top model by aeiTM on 110 post-cutoff antibody-antigen complexes (Fromm et al. 2026)
Coverage: 110 scored / Not reported eligible
Uncertainty: Not reported by the source
Evidence: Author-reported evaluation · source checkedEvaluating deep learning based structure prediction methods on antibody-antigen complexes · Table 1, row 'aeiTM', column '<R>'

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.

Reproduction

Split: Temporal split at the AlphaFold3 training cutoff
Adaptation: None; selection among sampled models
Scoring implementation: DockQ (Basu and Wallner 2016; Mirabello and Wallner 2024)

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-10-10-6e93f504adfc
Property and statement	Original source and location	Review and provenance
Reported result 0.562 Individual claims	Evaluating deep learning based structure prediction methods on antibody-antigen complexes Original source ↗ Table 1, row 'aeiTM', column '<R>' Version: Bioinformatics 42(4):btag136, 2026; PMC13061134 full-text XML Retrieved: 2026-10-09T21:21:58Z	source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-09 author reported Audit details Extracted by deterministic parse of JATS Table 1 (table-wrap btag136-T1), asserting the caption, the header, the nine row labels and three values of the form d.ddd per row. Independent review 2026-10-09: value and identity match the source. Field: `attributes.printed_value` Source artifact SHA-256: `a7320667ed6f7d8df440d90275d976b91d2fe98411172a79c6a304eb3f02275d` Hash scope: JATS XML parse (xml.etree), by extract/extract_structural.py Inspected artifact Extraction artifact SHA-256: `a7320667ed6f7d8df440d90275d976b91d2fe98411172a79c6a304eb3f02275d` Extraction artifact

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Sources and history

Release 2026-10-10-6e93f504adfc · Record review: source checked

1 source records and release history

Evaluating deep learning based structure prediction methods on antibody-antigen complexes · Original source · Bioinformatics 42(4):btag136, 2026; PMC13061134 full-text XML

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Technical metadata and extraction receipts

Stable ID: structural-20261009-result-fromm2026-af3-aeitm-oracle-spearman-per-target

metric: spearman-correlation
metric qualifier: mean over targets of the per-target correlation of score against DockQ
metric direction: higher
unit: unitless
printed value: 0.562
numeric value: 0.562
source locator: Table 1, row 'aeiTM', column '<R>'
review: method: source-hash-verification; deterministic-table-parse; independent-cell-check; method note: Re-downloaded the article XML and matched its SHA-256. Read Table 1 with a separate parser and checked printed value, numeric value, metric, qualifier, unit, direction and the linked configuration and protocol against the row and column headers.; reviewer: claude; reviewer note: Separate Claude review agent, independent of the extractor; no human review claimed; date: 2026-10-09; artifact sha256: a7320667ed6f7d8df440d90275d976b91d2fe98411172a79c6a304eb3f02275d; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13061134/fullTextXML; note: Extracted by deterministic parse of JATS Table 1 (table-wrap btag136-T1), asserting the caption, the header, the nine row labels and three values of the form d.ddd per row. Independent review 2026-10-09: value and identity match the source.
missing metadata: uncertainty: reason: unreported
scored count: 110

Related records

evaluation: AlphaFold3 top model by aeiTM on 110 post-cutoff antibody-antigen complexes (Fromm et al. 2026)

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