Result

0.939 Cell-type accuracy

scVI + scANVI · Cell-type accuracy · PBMCs-BS

Tested pipeline: scVI + scANVI
Task: PBMC cell-type classification
Dataset: PBMCs-BS
Procedure: All features and samples from PBMCs-BS; comparison pipeline combines scVI and scANVI.
Evaluation: scVI + scANVI: PBMC cell-type classification
Coverage: scored: unreported; eligible: unreported
Uncertainty: Not reported
Evidence: Independent external evaluation · source checkedscaLR: a low-resource deep neural network-based platform for single cell analysis and biomarker discovery · Table 2, Svi-tools (scVI & scANVI) row, Cell type Accuracy column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: Not reported
Adaptation: Not reported
Scoring implementation: Not reported

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Access requirements and official instructions: PBMC cell-type classification

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
attributes.printed_value 0.939 Individual claims	scaLR: a low-resource deep neural network-based platform for single cell analysis and biomarker discovery Original source ↗ Table 2, Svi-tools (scVI & scANVI) row, Cell type Accuracy column Version: version of record Retrieved: 2026-09-16T10:44:03.403844+00:00	source checked independent ai table review · 2026-09-16T10:44:03.405089+00:00 independent paper Audit details PBMCs-BS all-feature/all-sample cell-type accuracy block, not cell-state accuracy or time. Footnote letters on model labels excluded from identity. Source check verifies central value and table context, not experiment reproduction or all metadata. Field: `attributes.printed_value` Claim: claim-lit-b3-016 Source artifact SHA-256: `829afab6a4e30997c608745d3eb280105b8c5c4e601020ffdc55c866144527ca` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `829afab6a4e30997c608745d3eb280105b8c5c4e601020ffdc55c866144527ca` Extraction artifact

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Sources and history

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release history

scaLR: a low-resource deep neural network-based platform for single cell analysis and biomarker discovery · Original source · version of record

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Technical metadata and extraction receipts

Stable ID: lit-b3-016

areas: cells-tissues
tasks: PBMC cell-type classification
printed value: 0.939
numeric value: 0.939
metric: Cell-type accuracy
metric direction: unknown
unit: unitless
uncertainty: Not reported
source locator: Table 2, Svi-tools (scVI & scANVI) row, Cell type Accuracy column
review: method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:44:03.405089+00:00; notes: PBMCs-BS all-feature/all-sample cell-type accuracy block, not cell-state accuracy or time. Footnote letters on model labels excluded from identity. Source check verifies central value and table context, not experiment reproduction or all metadata.; evidence: {"table_xml_id": "TB2", "row_cells": ["Svi-tools(scVI & scANVI)b", "0.939", "53:52", "23.914", "0.870", "54:24", "23.645"], "selected_cell_zero_based": 1, "selected_cell_xml": "<td align=\"left\" rowspan=\"1\" colspan=\"1\">0.939</td>", "caption": "Accuracy, wall-clock time, and memory usage of different pipelines executed using all features and samples from the PBMCs-BS dataset."}; artifact sha256: 829afab6a4e30997c608745d3eb280105b8c5c4e601020ffdc55c866144527ca; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12121358/fullTextXML
legacy id: lit-b3-016
legacy row: id: lit-b3-016; paper id: scalr-2025; domain id: cells-tissues; task: PBMC cell-type classification; model: scVI + scANVI; model version: Not reported; dataset: PBMCs-BS; dataset version: Not reported; split: Not reported; metric: Cell-type accuracy; value: 0.939; unit: unitless; uncertainty: Not reported; protocol: All features and samples from PBMCs-BS; comparison pipeline combines scVI and scANVI.; source locator: Table 2, Svi-tools (scVI & scANVI) row, Cell type Accuracy column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC12121358/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:29:32Z
missing metadata: model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract

Related records

evaluation: scVI + scANVI: PBMC cell-type classification
subject: Reported Cell-type accuracy for scVI + scANVI

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