Result

Ligand RMSD under 2a rate (all-atom; top-scoring pose) of Chai-1 on LiPP lipid–protein complexes

60.7% Ligand RMSD under 2a rate (all-atom; top-scoring pose)

Methods

Tested configuration: Chai-1
Task: Lipid–protein binding pose
Dataset: LiPP lipid–protein complexes
Related family profiles: Chai-1
Procedure: Top-scoring pose; all-atom lipid RMSD below 2 Å.
Evaluation: Chai-1: Lipid–protein binding pose
Coverage: Not reported scored / Not reported eligible
Uncertainty: 95% CI 55.2 to 66.0
Evidence: Independent external evaluation · supersededThe LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods · Table 2, Chai-1 row, LiPP (N=331) % Success Rate column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: Not reported
Adaptation: Not reported
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Printed value 60.7 Individual claims	The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods Original source ↗ Table 2, Chai-1 row, LiPP (N=331) % Success Rate column Version: PMC13292216.1 Retrieved: 2026-09-16T10:41:16.548973+00:00	source checked ["ai-assisted-source-review"] · 2026-09-16T10:41:16.548973+00:00 independent paper Audit details JATS label is bare 2, which caused original parser miss. LiPP N=331 full-set column selected, not N=36 test subset. Caption success is lipid all-atom RMSD <2 Angstrom; PB-valid is a separate table. This verifies the central score at its source location, not every metadata field or an experimental reproduction. Field: `attributes.printed_value` Claim: claim-lit-041 Source artifact SHA-256: `6ff34f2f709a14858a3753abf9f8f6efa1e7e3c351f15c70cf64264193a9414e` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `6ff34f2f709a14858a3753abf9f8f6efa1e7e3c351f15c70cf64264193a9414e` Extraction artifact

How to read the evidence

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: superseded

1 source record and release history

The LiPP Benchmark Set for Modeling Lipid–Protein Complexes: Comparison of Co-Folding and Docking Methods · Original source · PMC13292216.1

Superseded by Chai-1 Full LiPP set lipid pose all-atom RMSD below 2 Angstrom

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Technical metadata and extraction receipts

Stable ID: lit-041

areas: molecular-interactions
tasks: Lipid–protein binding pose
printed value: 60.7
numeric value: 60.7
metric: ligand-rmsd-under-2a-rate
metric direction: unknown
unit: percent
uncertainty: type: confidence_interval; printed: 95% CI 55.2–66.0; lower: 55.2; upper: 66.0; level: 0.95
source locator: Table 2, Chai-1 row, LiPP (N=331) % Success Rate column
review: method: ai-assisted-source-review; reviewer: codex; reviewed at: 2026-09-16T10:41:16.548973+00:00; evidence: {"table_xml_id": "tbl2", "row_cells": ["Chai-1", "60.7 {55.2–66.0}", "36.1 {20.8–53.7}", "77", "-"], "selected_cell_zero_based": 1, "selected_cell_xml": "<td align=\"left\" colspan=\"1\" rowspan=\"1\">60.7 {55.2–66.0}</td>", "caption": "Success Rates (Success Defined Only by Lipid Pose All-Atom RMSD Cutoff Values Less Than 2 Å) of the Five Computational Methods Used in This Study on Lipid–Protein Complexes (via LiPP Benchmark Set) Compared to Protein-Small Molecule Complexes (via PoseBusters Benchmark Set)"}; artifact sha256: 6ff34f2f709a14858a3753abf9f8f6efa1e7e3c351f15c70cf64264193a9414e; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13292216/fullTextXML; method note: independent; table-level review; reviewer note: role: omics research agent; independent source-table review; not human review; note: JATS label is bare 2, which caused original parser miss. LiPP N=331 full-set column selected, not N=36 test subset. Caption success is lipid all-atom RMSD <2 Angstrom; PB-valid is a separate table. This verifies the central score at its source location, not every metadata field or an experimental reproduction.
legacy id: lit-041
missing metadata: model version: reason: unextracted; split: reason: unextracted
metric qualifier: all-atom; top-scoring pose

Related records

evaluation: Chai-1: Lipid–protein binding pose
subject: Reported Success rate, ligand all-atom RMSD <2 Å for Chai-1
supersedes: Chai-1 Full LiPP set lipid pose all-atom RMSD below 2 Angstrom

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