Result

0.388 F1-Score

Geneformer · F1-Score · M.S. single-cell dataset

Tested configuration: Geneformer
Task: Cell-type identification
Dataset: M.S. single-cell dataset
Related family profiles: Geneformer
Procedure: Native scLLM cell-type identification as reported in Table 2.
Evaluation: Geneformer: Cell-type identification
Coverage: scored: unreported; eligible: unreported
Uncertainty: Not reported
Evidence: Independent external evaluation · source checkedParameter-Efficient Fine-Tuning Enhances Adaptation of Single Cell Large Language Model for Cell Type Identification · Table 2, M.S. / Geneformer row, F1-Score column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: Not reported
Adaptation: Not reported
Scoring implementation: Not reported

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Access requirements and official instructions: Cell-type identification

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
attributes.printed_value 0.388 Individual claims	Parameter-Efficient Fine-Tuning Enhances Adaptation of Single Cell Large Language Model for Cell Type Identification Original source ↗ Table 2, M.S. / Geneformer row, F1-Score column Version: preprint archived 2024-01-30 Retrieved: 2026-09-16T10:41:16.530269+00:00	source checked independent ai table review · 2026-09-16T10:41:16.531756+00:00 independent paper Audit details Selected M.S. dataset block, first scGPT/Geneformer occurrences. F1-Score is last column; later dataset blocks deliberately excluded. This verifies the central score at its source location, not every metadata field or an experimental reproduction. Field: `attributes.printed_value` Claim: claim-lit-026 Source artifact SHA-256: `77a4a859010259eadf2187465db6ab385efa4927a5eadb95c1e01991044c283f` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `77a4a859010259eadf2187465db6ab385efa4927a5eadb95c1e01991044c283f` Extraction artifact

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release history

Parameter-Efficient Fine-Tuning Enhances Adaptation of Single Cell Large Language Model for Cell Type Identification · Original source · preprint archived 2024-01-30

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Technical metadata and extraction receipts

Stable ID: lit-026

areas: cells-tissues
tasks: Cell-type identification
printed value: 0.388
numeric value: 0.388
metric: F1-Score
metric direction: unknown
unit: unitless
uncertainty: Not reported
source locator: Table 2, M.S. / Geneformer row, F1-Score column
review: method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:41:16.531756+00:00; notes: Selected M.S. dataset block, first scGPT/Geneformer occurrences. F1-Score is last column; later dataset blocks deliberately excluded. This verifies the central score at its source location, not every metadata field or an experimental reproduction.; evidence: {"table_xml_id": "T2", "row_cells": ["", "Geneformer", "0.283", "0.235", "0.532", "0.388"], "selected_cell_zero_based": 5, "selected_cell_xml": "<td align=\"center\" valign=\"top\" rowspan=\"1\" colspan=\"1\">0.388</td>", "caption": "Performance of cell type identification using native scLLMs and popular tools.Bold value represents the highest score among the methods"}; artifact sha256: 77a4a859010259eadf2187465db6ab385efa4927a5eadb95c1e01991044c283f; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC10862733/fullTextXML
legacy id: lit-026
legacy row: id: lit-026; paper id: single-cell-peft-2024; domain id: cells-tissues; task: Cell-type identification; model: Geneformer; model version: Not reported; dataset: M.S. single-cell dataset; dataset version: Not reported; split: Not reported; metric: F1-Score; value: 0.388; unit: unitless; uncertainty: Not reported; protocol: Native scLLM cell-type identification as reported in Table 2.; source locator: Table 2, M.S. / Geneformer row, F1-Score column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC10862733/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:25:00Z
missing metadata: model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract

Related records

evaluation: Geneformer: Cell-type identification
subject: Reported F1-Score for Geneformer

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