Result

F1 of Geneformer on M.S. single-cell dataset

0.388 F1

Methods

Tested configuration: Geneformer
Task: Cell-type identification
Dataset: M.S. single-cell dataset
Related family profiles: Geneformer
Procedure: Native scLLM cell-type identification as reported in Table 2.
Evaluation: Geneformer: Cell-type identification
Coverage: Not reported scored / Not reported eligible
Uncertainty: Not yet extracted
Evidence: Independent external evaluation · source checkedParameter-Efficient Fine-Tuning Enhances Adaptation of Single Cell Large Language Model for Cell Type Identification · Table 2, M.S. / Geneformer row, F1-Score column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: Not reported
Adaptation: Not reported
Scoring implementation: Not reported

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Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Printed value 0.388 Individual claims	Parameter-Efficient Fine-Tuning Enhances Adaptation of Single Cell Large Language Model for Cell Type Identification Original source ↗ Table 2, M.S. / Geneformer row, F1-Score column Version: preprint archived 2024-01-30 Retrieved: 2026-09-16T10:41:16.530269+00:00	source checked ["ai-assisted-source-review"] · 2026-09-16T10:41:16.531756+00:00 independent paper Audit details Selected M.S. dataset block, first scGPT/Geneformer occurrences. F1-Score is last column; later dataset blocks deliberately excluded. This verifies the central score at its source location, not every metadata field or an experimental reproduction. Field: `attributes.printed_value` Claim: claim-lit-026 Source artifact SHA-256: `77a4a859010259eadf2187465db6ab385efa4927a5eadb95c1e01991044c283f` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `77a4a859010259eadf2187465db6ab385efa4927a5eadb95c1e01991044c283f` Extraction artifact

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Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

1 source record and release history

Parameter-Efficient Fine-Tuning Enhances Adaptation of Single Cell Large Language Model for Cell Type Identification · Original source · preprint archived 2024-01-30

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Technical metadata and extraction receipts

Stable ID: lit-026

areas: cells-tissues
tasks: Cell-type identification
printed value: 0.388
numeric value: 0.388
metric: f1-score
metric direction: unknown
unit: unitless
source locator: Table 2, M.S. / Geneformer row, F1-Score column
review: method: ai-assisted-source-review; reviewer: codex; reviewed at: 2026-09-16T10:41:16.531756+00:00; evidence: {"table_xml_id": "T2", "row_cells": ["", "Geneformer", "0.283", "0.235", "0.532", "0.388"], "selected_cell_zero_based": 5, "selected_cell_xml": "<td align=\"center\" valign=\"top\" rowspan=\"1\" colspan=\"1\">0.388</td>", "caption": "Performance of cell type identification using native scLLMs and popular tools.Bold value represents the highest score among the methods"}; artifact sha256: 77a4a859010259eadf2187465db6ab385efa4927a5eadb95c1e01991044c283f; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC10862733/fullTextXML; method note: independent; table-level review; reviewer note: role: omics research agent; independent source-table review; not human review; note: Selected M.S. dataset block, first scGPT/Geneformer occurrences. F1-Score is last column; later dataset blocks deliberately excluded. This verifies the central score at its source location, not every metadata field or an experimental reproduction.
legacy id: lit-026
missing metadata: dataset version: reason: unextracted; model version: reason: unextracted; split: reason: unextracted; uncertainty: reason: unextracted

Related records

evaluation: Geneformer: Cell-type identification
subject: Reported F1-Score for Geneformer

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