565 SNV false positives
Lancet SNV false positives
- Tested configuration
- Lancet
- Protocol
- Lancet paper virtual-tumor SNV/indel benchmark
- Dataset
- NA12892/NA12891 virtual tumor and matched normal
- Procedure
- Separate SNV and indel virtual-tumor pairs; real germline-supporting reads swapped at reference-homozygous/alternate-homozygous loci; binomial VAF means 0.05, 0.1, 0.2, 0.3; insertion max 13 bp, deletion max 35 bp.
- Evaluation
- Lancet evaluation
- Coverage
- scored: unreported; eligible: unreported
- Uncertainty
- Not reported
- Evidence
- Author-reported evaluation · source checkedGenome-wide somatic variant calling using localized colored de Bruijn graphs · Table 2, Lancet row (JATS Tab2)
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.
Reproduction
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- Not reported
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 565 Individual claims | Genome-wide somatic variant calling using localized colored de Bruijn graphs Table 2, Lancet row (JATS Tab2) Version: Europe PMC fullTextXML retrieved 2026-10-07T12:24:27.822425+00:00 | source checked automated source review · 2026-10-07T13:38:59Z author reported Audit detailsBounded transcription of a Codex-checked primary-source cell. No independent experimental reproduction or qualified human scientific review. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
View linked audit checks and correction history
Release 2026-10-07-1448159e6a81 · Record review: source checked
1 source records and release history
- Genome-wide somatic variant calling using localized colored de Bruijn graphs · Original source · Europe PMC fullTextXML retrieved 2026-10-07T12:24:27.822425+00:00
Technical metadata and extraction receipts
Stable ID: amp-oncology-rna-20261007-issue-10-result-lancet-snv-false-positives
- metric
- SNV false positives
- metric direction
- lower
- missing metadata
- None recorded
- numeric value
- 565
- printed value
- 565
- review
- method: automated_source_review; notes: Bounded transcription of a Codex-checked primary-source cell. No independent experimental reproduction or qualified human scientific review.; reviewed at: 2026-10-07T13:38:59Z; reviewer: Claude Sonnet AMP-integration worker, bounded transcription of Codex-checked primary values (workbench/amp-supervision/primary-review.md, integration-review-corrections.md); pending qualified human scientific review
- source locator
- Table 2, Lancet row (JATS Tab2)
- uncertainty
- Not reported
- unit
- variants
Related records
- evaluation: Lancet evaluation