kraken_false_negative_rank: dna-pathogen-20261009-benchmark-hall2024-mtb-read-classification
Descriptive fact transcribed from the pinned source.
Evidence
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Evidence table
Inspect claims, sources and review details
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6 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.field kraken_false_negative_rank Context-only references | Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data Results 'Classification of Mycobacterium reads', subsection 'Real Illumina' paragraph 3 Version: GigaScience 13:giae010, published online 2024-04-04; PMC10993716 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator Results 'Classification of Mycobacterium reads', subsection 'Real Illumina' paragraph 3 Context-only references | Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data Results 'Classification of Mycobacterium reads', subsection 'Real Illumina' paragraph 3 Version: GigaScience 13:giae010, published online 2024-04-04; PMC10993716 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.value With the full-size and 8 GB standard databases, kraken's missed M. tuberculosis reads were mostly not placed at species rank; in all cases at least 90% of these false negatives were classified correctly at genus level. Context-only references | Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data Results 'Classification of Mycobacterium reads', subsection 'Real Illumina' paragraph 3 Version: GigaScience 13:giae010, published online 2024-04-04; PMC10993716 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description Descriptive fact transcribed from the pinned source. Context-only references | Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data Results 'Classification of Mycobacterium reads', subsection 'Real Illumina' paragraph 3 Version: GigaScience 13:giae010, published online 2024-04-04; PMC10993716 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: subject dna-pathogen-20261009-benchmark-hall2024-mtb-read-classification Context-only references | Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data Results 'Classification of Mycobacterium reads', subsection 'Real Illumina' paragraph 3 Version: GigaScience 13:giae010, published online 2024-04-04; PMC10993716 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| name kraken_false_negative_rank: dna-pathogen-20261009-benchmark-hall2024-mtb-read-classification Context-only references | Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data Results 'Classification of Mycobacterium reads', subsection 'Real Illumina' paragraph 3 Version: GigaScience 13:giae010, published online 2024-04-04; PMC10993716 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-10-10-7b8f80935f90 · Record review: source checked
1 source records and release history
- Pangenome databases improve host removal and mycobacteria classification from clinical metagenomic data · Original source · GigaScience 13:giae010, published online 2024-04-04; PMC10993716 full-text XML
Technical metadata and extraction receipts
Stable ID: dna-pathogen-20261009-claim-hall2024-kraken-fn-genus
- field
- kraken_false_negative_rank
- value
- With the full-size and 8 GB standard databases, kraken's missed M. tuberculosis reads were mostly not placed at species rank; in all cases at least 90% of these false negatives were classified correctly at genus level.
- source locator
- Results 'Classification of Mycobacterium reads', subsection 'Real Illumina' paragraph 3
- review
- method: source-hash-verification; ai-assisted-source-review; reviewer: claude; reviewer note: Separate Claude review agent, independent of the extractor; no human review claimed; date: 2026-10-09; artifact sha256: ea3c34a01222d5c5203c52a85a700b7dae5cccd6f48e6d50808d5abbd6385554; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC10993716/fullTextXML; method note: Compared the claim text with the cited paragraphs and table cells of the re-downloaded article XML.; note: Transcribed from the pinned article XML text. Pending independent review. Independent review 2026-10-09: wording matches the cited locator.