Profile-HMM sequence search
Candidate reference for task-specific evaluation; no score is implied.
Evaluation results
0 evaluations · 0 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
No evaluations linked in this release.
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
Applicable tests and references
Applicability is distinct from a completed evaluation.
- TAPE Remote Homology Detection · Proposed association
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
24 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.applicability proposed Context-only references | soedinglab/hh-suite: README.md No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 43095e46ada4ec2a8a47d47ef5ad7e38b1429f7b | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.applicability proposed Context-only references | soedinglab/hh-suite official source No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 43095e46ada4ec2a8a47d47ef5ad7e38b1429f7b | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.applicability proposed Context-only references | songlab-cal/tape official source No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 6d345c2b2bbf52cd32cf179325c222afd92aec7e | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.baseline_type biological-procedure Context-only references | soedinglab/hh-suite: README.md No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 43095e46ada4ec2a8a47d47ef5ad7e38b1429f7b | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.baseline_type biological-procedure Context-only references | soedinglab/hh-suite official source No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 43095e46ada4ec2a8a47d47ef5ad7e38b1429f7b | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.baseline_type biological-procedure Context-only references | songlab-cal/tape official source No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 6d345c2b2bbf52cd32cf179325c222afd92aec7e | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.requirements Pinned sequence database, MSA construction and score threshold. Context-only references | soedinglab/hh-suite: README.md No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 43095e46ada4ec2a8a47d47ef5ad7e38b1429f7b | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
| attributes.requirements Pinned sequence database, MSA construction and score threshold. Context-only references | soedinglab/hh-suite official source No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 43095e46ada4ec2a8a47d47ef5ad7e38b1429f7b | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.requirements Pinned sequence database, MSA construction and score threshold. Context-only references | songlab-cal/tape official source No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 6d345c2b2bbf52cd32cf179325c222afd92aec7e | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.scope_note Source documents method or task context; proposed applicability requires protocol review. Context-only references | soedinglab/hh-suite: README.md No field-specific location recorded Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 43095e46ada4ec2a8a47d47ef5ad7e38b1429f7b | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact |
Sources and history
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: discovered
3 source records and release history
- soedinglab/hh-suite official source · Original source · 43095e46ada4ec2a8a47d47ef5ad7e38b1429f7b
- songlab-cal/tape official source · Original source · 6d345c2b2bbf52cd32cf179325c222afd92aec7e
- soedinglab/hh-suite: README.md · Original source · 43095e46ada4ec2a8a47d47ef5ad7e38b1429f7b
Technical metadata and extraction receipts
Stable ID: discovery-baseline-profile-hmm-sequence-search
- areas
- protein-function
- applicability
- proposed
- baseline type
- biological-procedure
- missing metadata
- implementation version: unextracted; protocol applicability: unextracted
- requirements
- Pinned sequence database, MSA construction and score threshold.
- scope note
- Source documents method or task context; proposed applicability requires protocol review.
- entity classification
- review date: 2026-09-17; rationale: This record defines a proposed comparison/reference role. Its biological-procedure value remains a baseline-type facet; the underlying method/model/library is represented by a linked entity where verified. A baseline role is not itself a measured result or a new scientific architecture.; source ids: src-discovery-songlab-cal-tape; evidence-official-863f6c2e6e18152c2f8b; source locator: Pinned README: compatibility notice; Evaluating a Downstream Model; Data; task leaderboards; README task-specific leaderboard and data-source references | README.md: opening, Available Databases and Usage; ambiguities: Applicability is proposed. This classification does not certify that the baseline was run, was matched to every linked protocol, or constitutes an experimental ceiling.
Related records
- applicable to: TAPE Remote Homology Detection
- model: HH-suite